<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29352

Description Uncharacterized protein
SequenceMASNMQASGPPQPPRPPMMGSTAPPQNMGPPIPMQFRPAGPPQQPQFMQPVPQQFRPVGQAMPGANMGMPGQMPHFPQPGQHMPHSGHVPPASQAVPMAYQAARPMSSAPMQPQQQAVFPGGHMPTMGAPMPPPSYTYQPTSVPPVAQSWGTALGQSVPLVPPAVQPGHQSMSASLPSVSSTEPSSSDWQEHTSQDGKKYYYNKRTRQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKLTKQSKWSIPDELKIARELAEKASNQQPDRETETTTSGPVGSASVPVEPSLPANQSSSVVGIIASTTHDALANLPLPPDAPPGAGLSYNGDIASSHVDTQNGGTSASVVAPVTTSTGVSSVAIDAGTSRNNYESSSRTITTDTKDGASAEDLEEAKKTMPTAGKINVTPLEEKTSEEEPPVYANKLEAKNAFKALLESANVESDWSWDQAMRVIINDKRYGALRSHGERKQVYNEYLNQRKKIEAEERRVKQRKSRDDFLTMLEECKDLTSSTRWSKAITMFEDDERFNAVERPREREDLFENYLVELQKKEKAKAAEEHKRHVAEYRAFLESCDFIKASTQWRKVQDRLEDDERCSRLEKIDRLDVFQEYIRDLEKEEEEQKRIQKEHTRRQERKNRDEFRKMLEEHVADGTLTAKTHWRDYCAQVKDSRAYLAVASNMSGSMPKELFEDVIEELDKQYQDDKTLIKDELKSGKIHMTTSWTLEDFQAAVTGDDNCKGISNINIKLIYDDQIERLREKDLKEAKKRQRLGDNFLDFLYSIKEISATSTWEDSKPLFEDSQECRALDSETYARELFEECVVRLKERLKEKERMREEEKAKKEKEREEREKKKEKEKERKEKERKEKERDREKEREKEKVKDRSRREEMEIDGADMETHGSKDKKREKDKEKKHKRRHHDATDDLSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGAHEELEDGELGEDGEIH
Length998
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-1.202
Instability index58.38
Isoelectric point6.17
Molecular weight114101.67
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29352
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     162.18|      19|      20|      20|      38|       1
---------------------------------------------------------------------------
   20-   38 (40.88/18.41)	GSTAPPQNMGPP....IP...MQFRP
   40-   57 (36.52/15.75)	GPPQQPQFM.QP....VP...QQFRP
   59-   74 (29.75/11.64)	GQAMPGANMGMP....GQ...M...P
   80-  101 (25.12/ 8.82)	GQHMPHSGHVPPasqaVP...MAYQ.
  121-  140 (29.91/11.73)	GGHM.P.TMGAP....MPppsYTYQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      89.36|      20|      20|     845|     864|       2
---------------------------------------------------------------------------
  845-  860 (20.12/ 6.39)	.........KKEKEREEREKKKEKE
  861-  882 (25.70/10.49)	KERK..ekeRKEKER.DREKEREKE
  931-  950 (23.53/ 8.89)	SERD.....EKDDSKKSRRHSSDRK
  951-  975 (20.01/ 6.31)	KSRKhthasDSDSENRHKRHKKDRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.70|      39|      39|     189|     227|       3
---------------------------------------------------------------------------
  189-  227 (76.66/54.97)	WQEHTSQDGKKYYYNKRTRQSSWEKPAELMTPLERAD.AS
  230-  269 (67.04/47.04)	WKEFTTAEGRKYYYNKLTKQSKWSIPDELKIARELAEkAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     471.74|      65|      65|     503|     567|       4
---------------------------------------------------------------------------
  437-  496 (76.43/43.06)	.F...KALL.E.SAN..VESDWSWDQA..MRVIINDKRYGALRS......HGERKQVYNEYL...NQ..RK..KIEAEERRVK
  503-  567 (109.44/64.89)	DF...LTMLEE.CKD..LTSSTRWSKA..ITMFEDDERFNAVER......PREREDLFENYLVELQK..KE..KAKAAEEHKR
  571-  636 (91.50/53.03)	EY...RAFLES.CDF..IKASTQWRKV..QDRLEDDERCSRLEK......I.DRLDVFQEYIRDLEK..EEeeQKRIQKEHTR
  645-  710 (67.03/36.84)	EF...RKMLEEhVADgtLTAKTHWRDY..CAQVKDSRAYLAVASnmsgsmPKE...LFEDVIEELDK..Q.......YQDDKT
  731-  774 (44.64/22.02)	DFqaaVTGDDN.CKG..ISN.......inIKLIYDDQ....IER......LREK.D.....L.............KEAKKRQR
  778-  843 (82.70/47.20)	NF...LDFLYS.IKE..ISATSTWEDS..KPLFEDSQECRALDS......ETYARELFEECVVRLKErlKE..KERMREEEK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.62|      15|      20|     143|     161|       5
---------------------------------------------------------------------------
  143-  161 (21.46/27.73)	VPPVAQSwgtaLGQSVPLV
  165-  179 (28.16/19.62)	VQPGHQS....MSASLPSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.50|      26|      26|     285|     310|       6
---------------------------------------------------------------------------
  285-  310 (44.49/26.01)	VG..SASVPVEPSLPANQSSSVVGIIAS
  314-  339 (43.48/25.26)	DA..LANLPLPPDAPPGAGLSYNGDIAS
  346-  370 (26.53/12.63)	NGgtSASV.VAPVTTSTGVSS.VAIDA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.78|      16|      17|     371|     386|       8
---------------------------------------------------------------------------
  371-  386 (27.19/16.21)	GTSRNNYESSSRTITT
  391-  406 (26.58/15.68)	GASAEDLEEAKKTMPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29352 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKIARELAEKASNQQPDRETETTTSGPVGSASVPVEPSLPANQSSSVVGIIA
2) KERMREEEKAKKEKEREEREKKKEKEKERKEKERKEKERDREKEREKEKVKDRSRREEMEIDGADMETHGSKDKKREKDKEKKHKRRHHDATDDLSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGAHEELEDGELGEDGEIH
3) MASNMQASGPPQPPRPPMMGSTAPPQNMGPPIPMQFRPAGPPQQPQFMQPVPQQFRPVGQAMPGANMGMPGQMPHFPQPGQHMPHSGHVPPASQAVPMAYQAARPMSSAPMQPQQQAVFPGGHMPTMGAPMPPPSYTYQPTSVPPVAQSWGTALGQSVPLVPPAVQPGHQSMSASLPSVSSTEPSSSDWQEHTSQDGKKYYYNKRT
4) TTHDALANLPLPPDAPPGAGLSYNGDIASSHVDTQNGGTSASVVAPVTTSTGVSSVAIDAGTSRNNYESSSRTITTDTKDGASAEDLEEAKKTMPTAGKINVTPLEEKTSEEEPPVYAN
254
835
1
311
309
998
206
429










Molecular Recognition Features






MoRF SequenceStartStop




1) KHKRRHH
917
923