<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29338

Description Uncharacterized protein
SequenceMNQQNPNIPNAVQQNQQQQQGLNLNLQNDVPNANWRDELNIQDRTRFISQLGSALKHLSPNTSDNDIIAAAKNFELNLYNKSPSKNQYILAYAKKFHQIKFQLQNQNGSAPPMMNDNQLQINLNALNGQQMSPLLQQQQPQKQAASPQVQPVVQQQMQDMTPLNQQQATINNQNQIRASMFPQTMLQGRSPQPQQAQQQQQPQPQPPQQQQQQAAPGNQQQQVNAQMLALQRTAAQAMAAAAAAAGNNNNTAMMNNAAINAATQQQIPVNLLQQLNMANTSQAAMTMPPRQFQMYLARQLALQQQSGQQQGQFNNNTTVDSSTMMNMNNIPNNVAQNFRPPVSNVNTNNNNTVMQTNNFQNQNQQAQNMMGQQQHLNPEILMQHLQQQQQQVQQAQQQQAQQVQTPAQALAQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQTKAQALAQAQIQAQQQVQQAQQMKSQQQQSQTTQMNQQQQVASNTMQPTQMNATQAVHPSLQQRTQAAEYVRQMDESVRNSRVRNNPIEGISEQEKAAIRDSVALIKPMYDKIDSLLPVFFALTSNVEATKRLMLMKYMFEDQLNALQQNKYVISLDHLTKLREQFSGYFSWVRNAVGAHSQQQTQAQQQQQQLQQQQVQQQVQPPQVQPQQVQSPQVQPQQVQQAQPLQQTNSVAAPQPLDPQQQIQQQQIQQLQQPAQGEFNQQQQQQIPLTQQYADATKLAQAQAMAQAQAYAAQQLQQRAQNPSATSTPNMGAIGQIGIKRGSIDLKLPPNKKQKAAGSTPQQTTIDLTQTPPPPQHAEPASTETMANSNTSIANANPGGMTASQRQTQSQMIYQAAISSGIPPQIVKLLPPRALQCSWLLQQAAQNRINVTPQQQQQIRNMLNERVEAAKQQLARQAMEAQQQQQSQAPPPVSTATMVTPSPPMVKAQTKTPDAVLQQQPPVVKAEPDYKNNESLQQAAQMMHLLQQQQQQQQQRQQPRQPTVAAPQPSPVVQRPQPPQPPPAQILPLKTTVPSPKPTPGAALKLAVQSLDSKTSKLIDIQKEVERLFSRPDQPKTMKNEACLQPEGPLNTTIGKVDEKDVQEKKVPTEEEVLNSWYEVGLETGVPEIYEIMPGFSFDDSPIVST
Length1156
PositionTail
OrganismRhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (Mucormycosis agent) (Rhizopus arrhizus var. delemar)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Rhizopodaceae> Rhizopus.
Aromaticity0.03
Grand average of hydropathy-0.943
Instability index68.75
Isoelectric point9.37
Molecular weight129078.62
Publications
PubMed=19578406

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29338
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     474.45|      64|      64|     105|     168|       3
---------------------------------------------------------------------------
  105-  168 (120.32/24.56)	NQ....NGSAPPM.MNDNQLQINLNALNGQQMSPLLQQQQPQKQAASPQVQPVVQ........QQMQDM.T..P...LNQQQA
  172-  222 (96.12/17.48)	NQ....NQIRASM.FPQTMLQ.......GR..SPQPQQAQQQQQ...PQPQPP.Q........QQQQQA.A..P...GNQQQQ
  273-  337 (69.54/ 9.71)	QQlnmaNTSQAAMtMPPRQFQMYL....ARQLA..LQQQSGQQQGQFNNNTTVDS........STMMNM.NniP...NNVAQN
  361-  413 (73.78/10.95)	NQ....NQQAQNM.MGQQQ.HLNPEIL....MQH.LQQQQQQVQ....QAQ...Q........QQAQQVqT..PaqaLAQA..
  669-  700 (56.88/ 6.00)	VQ........PP........Q.....V.........QPQQVQ....SPQVQP...........QQVQQA.Q..P...LQQTNS
  982- 1031 (57.81/ 6.27)	N...............NES......LQQAAQMMHLLQQQQQQQQQRQQPRQPTVAapqpspvvQRPQPP.Q..P.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.65|      28|      29|     720|     747|       5
---------------------------------------------------------------------------
  461-  488 (41.35/ 8.55)	AQQQAQTKAQALAQAQIQAQQQVQQAQ...Q
  721-  751 (48.29/11.83)	LQQPAQGEFNQQQQQQIPLTQQYADATklaQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.59|      11|      28|     938|     953|       9
---------------------------------------------------------------------------
  938-  953 (16.89/15.36)	QAPPPVstatmVTPSP
  968-  978 (21.70/ 7.99)	QQQPPV.....VKAEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.03|      17|      20|     794|     811|      10
---------------------------------------------------------------------------
  794-  810 (28.74/13.99)	IDL...KLPPNKKQKAAGST
  816-  835 (26.29/ 6.86)	IDLtqtPPPPQHAEPASTET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.15|      10|      20|       1|      11|      11
---------------------------------------------------------------------------
    1-   11 (16.09/10.08)	MNQQNpNIPNA
   24-   33 (19.06/ 6.84)	LNLQN.DVPNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.32|      11|      15|     497|     507|      12
---------------------------------------------------------------------------
  497-  507 (19.86/ 6.51)	QTTQMNQQQQV
  513-  523 (19.46/ 6.18)	QPTQMNATQAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.21|      15|     166|     753|     768|      13
---------------------------------------------------------------------------
  252-  266 (25.02/ 8.11)	AMMNNAAINAATQ.QQ
  753-  768 (23.19/10.53)	QAMAQAQAYAAQQlQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.72|      12|      29|     571|     582|      15
---------------------------------------------------------------------------
  571-  582 (21.88/16.82)	LIKPMY.DKIDSL
  601-  613 (17.84/12.20)	LMKYMFeDQLNAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.53|      13|     284|      61|      75|      17
---------------------------------------------------------------------------
   62-   74 (21.87/18.19)	TSDNDIIAAAKNF
   84-   96 (22.66/ 6.54)	SKNQYILAYAKKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29338 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAQAMAAAAAAAGNNNNTAMMNNAAINAATQQQ
2) AQNRINVTPQQQQQIRNMLNERVEAAKQQLARQAMEAQQQQQSQAPPPVSTATMVTPSPPMVKAQTKTPDAVLQQQPPVVKAEPDYKNNESLQQAAQMMHLLQQQQQQQQQRQQPRQPTVAAPQPSPVVQRPQPPQPPPAQILPLKTTVPSPKPTPGAALKLAVQ
3) FQLQNQNGSAPPMMNDNQLQINLNALNGQQMSPLLQQQQPQKQAASPQVQPVVQQQMQDMTPLNQQQATINNQNQIRASMFPQTMLQGRSPQPQQAQQQQQPQPQPPQQQQQQAAPGNQQQQVNAQMLALQR
4) IQKEVERLFSRPDQPKTMKNEACLQPEGPLNTTIGKVDEKDVQEKKVPTE
5) PPQVQPQQVQSPQVQPQQVQQAQPLQQTNSVAAPQPLDPQQQIQQQQIQQLQQPAQGEFNQQQQQQIPLTQQYADATKLAQAQAMAQAQAYAAQQLQQRAQNPSATSTPNMGAIGQIGIKRGSIDLKLPPNKKQKAAGSTPQQTTIDLTQTPPPPQHAEPASTETMANSNTSIANANPGGMTASQRQTQSQMIYQAA
6) PVNLLQQLNMANTSQAAMTMPPRQFQMYLARQLA
7) QMKSQQQQSQTTQMNQQQQVASNTMQPTQMNATQAVHPSLQQRTQAAEYVRQMDESVRNSRVRNNPIEGISEQ
8) QQQSGQQQGQFNNNTTVDSSTMMNMNNIPNNVAQNFRPPVSNVNTNNNNTVMQTNNFQNQNQQAQNMMGQQQHLNPEILMQHL
9) QVQTPAQALAQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQA
234
895
101
1071
671
268
488
303
402
266
1059
232
1120
867
301
560
385
465










Molecular Recognition Features






MoRF SequenceStartStop




NANANA