<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29335

Description Uncharacterized protein
SequenceMADVNWRSDVSAADRTRFINQLSSALKCLSPNASDNEAYTIATNYEAGLFQRCTNKQASYSNPLVTQPLMYARPRPSAQQFQMYIARQMALQQQQFLQQYPSSNLQSSSYDSMNTTPSLTPLSATSTNTSVNTIVTNKMDQQPIYSLNPNMMQQQNPVNQDMMMQVNRPFLQKQQPMMMKMMQRPPSNVMIKANAIVKQLDENTRQTKVNCSFIEDLNEQDKMIIKEQIQRMKLTYDKLDHLLPIFFSMTSNYEATRRIILMKYMLEDQFNFLPQDKYIVGLDKVYKLRDQLNGYFNWIRNNIGINHPLQQQQQAQQHIAQQQLLQQNLMQQQFLLQQQQHQQQQHQQQQHQQQQHQQQQHQQQQQKLLSQAPLSQASLSQTQLVQSQLSQAQLTPPQLTQSQLAQQQLTQSQLTQQQLVQSKLIQQQLVQSQLAQQQQLAQQQLSQSQLVQQQLAQTQLIQTQLPQQQQQQSSSQLPLSQTQFTSPQTFNDINNSTHHLTTNITNANDIPSPSKSPMPLKRNSIDLKLPPSKKQRGTKQPSSANKRKTSSSSSSTSDVAQPIVSTGIPVKDGLPLDQHEMQSQTAYLAAVKAGIPREIVDLLPPKALHFNLVLQQAAENKINLQPQQQQQIQSMLHESIEQAKMTLNINATSSGTKTDTNNATTLVMDPSLDMMNFGGCLKEGYKDETFGAQPDLALMTMPVQQEKSEEEEGGLFSWIDTTHLDLGFDFDGSEFVKFDDNESEKLMDDNGKLCVV
Length756
PositionTail
OrganismRhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (Mucormycosis agent) (Rhizopus arrhizus var. delemar)
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Rhizopodaceae> Rhizopus.
Aromaticity0.05
Grand average of hydropathy-0.745
Instability index65.09
Isoelectric point6.71
Molecular weight86142.10
Publications
PubMed=19578406

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29335
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.50|      16|      18|     401|     418|       1
---------------------------------------------------------------------------
  341-  359 (25.68/ 7.11)	HQQQqhqQQQHQQQQHQQQ
  434-  449 (31.83/ 7.25)	LAQQ...QQLAQQQLSQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     223.35|      42|      42|     386|     427|       2
---------------------------------------------------------------------------
   60-  113 (41.07/ 9.15)	YSNPLVTQPlmyarprpsaqqfqmYIARQ....MALQQQQFLQQYPSSN.L..............................QSS....SYDSM
  147-  183 (34.78/ 6.60)	LNPNMMQQQ...............NPVNQdmmmQVNRPFLQKQQPMMMK.MMQ........................................
  305-  373 (43.41/10.10)	INHP.LQQQ...............QQAQQ....HIAQQQLLQQNLMQQQfLLQQqqhqqqqhqqqqhqqqqhqqqqhqqqqQKL....LSQAP
  394-  433 (59.85/16.77)	LTPPQLTQS...............QLAQQ....QLTQSQLTQQQLVQSK.LIQQ........................qlvQS.........Q
  450-  483 (44.25/10.44)	L.....VQQ...............QLAQT....QLIQTQLPQQ.....Q...QQ...........................QSSsqlpLSQTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.44|      15|      24|     264|     281|       3
---------------------------------------------------------------------------
  264-  281 (24.61/27.27)	YMLEDQ....FNFLPQDkyiVG
  286-  304 (24.84/16.55)	YKLRDQlngyFNWIRNN...IG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.46|      11|      23|     665|     675|       7
---------------------------------------------------------------------------
  665-  675 (20.50/12.80)	TLVMDPSLDMM
  689-  699 (19.96/12.25)	TFGAQPDLALM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29335 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QTQLPQQQQQQSSSQLPLSQTQFTSPQTFNDINNSTHHLTTNITNANDIPSPSKSPMPLKRNSIDLKLPPSKKQRGTKQPSSANKRKTSSSSSSTSDVAQPIVSTGIPVKDGLPLDQHEMQS
2) SSNLQSSSYDSMNTTPSLTPLSATSTNTSVNTIV
462
102
583
135










Molecular Recognition Features






MoRF SequenceStartStop




NANANA