Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MDEAEDIPVTWRIAHENEENLDNQILLELWVFWFDDGHTGKVDSNESLRELDEAKVGSFTWENAYSKLQSPTASPLSSGVQADTAAPVEVSTEYKMFIRSLRNLVDAQMKNQGAVPLGEFYIFPSNDEFNDVMRDESIDSHMLTSSLCCSYNVYLASTNLIFQPNTRRMRLKPIALYQNRMRGRKAIISPSGEYVTVVSNTYNLPRQTEEVILKKWSSLLDIPYTSLIQHNLLKPLSLQEQKLEQPHNFNKRSPSLIALKNMNDGTIFYYPIALVFVSSSSKMSPTDMAGTNGLFKFNQGISENLGDKWNRSSWNEKVANYWEFVCPKDSVVSSVLDMLSQESTTSGNQAGFLQKPIHESTTNASPLMVTTPMATPASTTGNQQRTDSSISSTPITHQEEGEDKSKLRNQQNLSLAEFAMANFALSDSNNGDMPEYPQQYANDYSNGSIVMDNGSSIQQPQQQQMHLSPQVESIKLENLPMAIRNNGLLPVAGHASNSSAYHSPQMANLGLDAFNLGDNMGVNDMILDIPDRWNDDTMGGLDNFDLGVTEEDFDFFKSEPVTAPAIMSVKNEMFIDSNATADSLMLIDTDIKQDESNIDNNFDMLDKDKLLVLDDKSAVMMNTDIESTTARIHDLSVTPLGVGMAQQDNIEFQQDQRVDPNLLHKQLLFHQQQQVDQDNLSFQRDKPKQRELFIPPTFAPVKINFLVNDSKYFNGGKFTYPSIDQDSNVESRLQKSNYYRPDYIPISRSKRLRKRKALKPAKALKEDKDVTESNNAAEGQFVQKVESTTKLDSSHSSKHGSVVNSNMTGNSSSVTNCSSSSSSGSSSDYDSSSCYESDYSDDDDMTNKPGRVLDHVSSAQDSYIDKLIFASPFQPSPKQSVDKTMFEYDSPFADAVADTYSKSNRQITIKNMEDYKTLEYLCQQVVLGGYPFSGGFESVSSNGIEANEGESTKAVIARRRNLLQTFYGDQPLLPASVTVKGPLNVQQYYDLSETNQAHSKYGKYQVKRRRPAEPNLDTLRPPNIVVNRQEELIEGTTKFIMFWEKLRLEPYSCKKHINYFIIYPENDSTERSISQFFKNLGTLYETCQLGSHQPGNIGSYRKGLVPVRLLSLAQDESLEDQQMRSYLTECQNLGSTLGSVPGENVYNVIYMLNPSSDLQSNVHLTRCFSKLVEAYDTAVLNSGTRTSNAKPIMQLIPVEHVLRSSSFGGCLKFGLKEIAFSVYSKCRAVVTRRRNNGNLESSVSTAEIYAPLFVLPKSVPNSVQYSLKKALCPFPSILESHAVLHMGYCFSFDKRWMIIVWTDNNGELIEFATLDSQSQYRNMSQLFEEAWRRTKIISKRTGFIWTFVIAKIGLLFREELKIWINCIGQDEKAAIVCLDLESPLNILPIPSAPMTESMASSSMMDSIGTNVPSIVNSTSNVGGIGAGFNSKKSSFLADENGVGQTKALLLNHRVAYSSKRERASLAILSMDPSSNTENWMIPLASGYTIYTPLPTENSRHGLFNSNPPVIEIHLVFNQTSHSAYSTLRDIIQKFHALSYVNIMSSNSNRLPIHLALVERLSRILLVVNT |
Length | 1569 |
Position | Kinase |
Organism | Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (Mucormycosis agent) (Rhizopus arrhizus var. delemar) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Rhizopodaceae> Rhizopus. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.444 |
Instability index | 51.68 |
Isoelectric point | 5.40 |
Molecular weight | 175815.56 |
Publications | PubMed=19578406 |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP29333 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 82.35| 25| 29| 789| 816| 1 --------------------------------------------------------------------------- 792- 816 (43.75/28.14) DSSHSSKHGSVVNSNMTGNS.....SSVTN 818- 847 (38.60/16.84) SSSSSSGSSSDYDSSSCYESdysddDDMTN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 155.23| 48| 234| 1051| 1104| 3 --------------------------------------------------------------------------- 1051- 1104 (73.35/71.90) YSCKKHInYFIIYPEND......STERSISQfFKNLGTLYETcqlgSHQPGNIGSYRKGL 1290- 1343 (81.88/56.82) FSFDKRW.MIIVWTDNNgeliefATLDSQSQ.YRNMSQLFEE....AWRRTKIISKRTGF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 106.60| 35| 47| 520| 559| 5 --------------------------------------------------------------------------- 520- 556 (61.35/48.18) MGV.NDMILDipDRWNDDTMGGLD...NFDLGVTEEDFDFF 567- 605 (45.25/22.31) MSVkNEMFID..SNATADSLMLIDtdiKQDESNIDNNFDML --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 104.34| 26| 47| 675| 701| 8 --------------------------------------------------------------------------- 675- 701 (40.92/28.57) VDQDNLSFQRDKpKQRELFIPPTFAPV 706- 721 (22.00/ 8.92) LVNDSKYFNGGK......FTYP..... 723- 746 (41.43/23.63) IDQDSNVESR...LQKSNYYRPDYIPI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 100.29| 29| 167| 235| 265| 9 --------------------------------------------------------------------------- 235- 265 (49.05/42.45) PLSLQEQ.....KLEQPHNFnkRSPSL.......IALKNMNDG 394- 431 (30.88/18.62) PITHQEEgedksKLRNQQNL.....SLaefamanFALSDSNNG 456- 478 (20.36/ 9.16) ..SIQQP.....QQQQMH....LSPQV.....esIKLEN.... --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) YIDKLI 2) YYRPDYIPISRSKRLRKRKALKPA | 863 738 | 868 761 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab