<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29329

Description Uncharacterized protein
SequenceMAFVMSLARTKRVKYIGQDGSEVFQEDNRWHFLSAENLASQGEVDVILDLVSAVEAGQHLNVANVPPPKNTLHGLTSQRALQVQAKRLQLQDAAQRLSRGAGLLAASLDRDDTYYSQAAQLQRSWKLKASPSGAAAPLTVDVSLPFAPRGKREPAVEPLLLDRLPNGEVCIPELAGLEGGSISHEERVDGMSSNGFAEMQEPGSTANEPGPSGRGGVDAAYRLLQSRQRQVLWGAVQRLLEAEAAEVDGGGSGHVLAAELVKRATGPAQPPAAALGPLLLSLFLKAVDERGGGVLAEACGWIRFVAFHARVCASLERQAARLLDVSLSWLPVTGLMRSAVQIRIDSRPPLLLLIAGETLLLEGQAGGGAAAFMGLRNGSCGQSRVPKQESNSLLHRLRLSSGY
Length403
PositionHead
OrganismCoccomyxa subellipsoidea (strain C-169) (Green microalga)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Trebouxiophyceae> Trebouxiophyceae incertae sedis> Elliptochloris clade> Coccomyxa.
Aromaticity0.05
Grand average of hydropathy-0.109
Instability index47.54
Isoelectric point7.07
Molecular weight42843.29
Publications
PubMed=22630137

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29329
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.07|      10|      14|     234|     243|       2
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  234-  243 (16.23/ 8.06)	GAVQRLLEAE
  250-  259 (15.84/ 7.70)	GGSGHVLAAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.44|      17|     117|     145|     161|       4
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  131-  147 (27.98/17.00)	PSGAAAPLTVDVSLPFA
  148-  164 (28.47/17.43)	PRGKREPAVEPLLLDRL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29329 with Med17 domain of Kingdom Viridiplantae
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