<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29326

Description Heat shock protein 70
SequenceMAKQAPAIGIDLGTTYSCVGVWMNDRVEIIANDMGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRKFHDASIQADIKHWPFTVKPGPGDKPMIEVDYKGEKREFSAEEVSSMVLVKMKETAQAFLGADKEVKRAVVTVPAYFNDSQRQATKDAGVIAGLDVMRIINEPTAAAIAYGLDKKSTSVGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNFFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSSAQTSIEIDSLFEGVDFYSSITRARFEELNMDLFRKCMEPVEKTLRDAKMDKSSVNEIVLVGGSTRIPKVQQMLQDFFNGKELCKAINPDEAVAYGAAVQAAILSGEGSEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERSRTRDNNLLGKFELSGIPPAPRGVPQINVVFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIERMVQEAEKYKAEDEEARKRIDAKNALENYAFNMRNTIKDEKVASKLDKDDLEKIEKEVDEAISWLDANQLAETEELEHKLKELEGVCSPIISKMYGAAGGAEGMPGGMPGGMPDMSGASAGGGSSGPGPKIEEVD
Length657
PositionUnknown
OrganismCoccomyxa subellipsoidea (strain C-169) (Green microalga)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Trebouxiophyceae> Trebouxiophyceae incertae sedis> Elliptochloris clade> Coccomyxa.
Aromaticity0.06
Grand average of hydropathy-0.387
Instability index36.88
Isoelectric point5.09
Molecular weight71830.64
Publications
PubMed=22630137

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29326
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.37|      17|      19|     612|     628|       1
---------------------------------------------------------------------------
  612-  628 (33.19/15.74)	IISKMYGA.AGGAEGMPG
  633-  650 (30.18/13.75)	GMPDMSGAsAGGGSSGPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.49|      19|      22|       1|      19|       2
---------------------------------------------------------------------------
    1-   19 (35.10/25.99)	MAKQAPAIGIDLG..TTYSCV
   23-   43 (30.40/21.46)	MNDRVEIIANDMGnrTTPSYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.98|      17|      17|     561|     577|       3
---------------------------------------------------------------------------
  535-  552 (22.11/13.54)	DEEARKRIDaKNALENYA
  561-  577 (27.31/18.50)	DEKVASKLD.KDDLEKIE
  581-  596 (26.57/17.79)	DEAI.SWLD.ANQLAETE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.75|      10|      27|     206|     215|       4
---------------------------------------------------------------------------
  206-  215 (19.09/ 9.77)	LGGGTFDVSL
  234-  243 (19.67/10.27)	LGGEDFDNRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.94|      13|      18|     104|     116|       8
---------------------------------------------------------------------------
  104-  116 (22.64/13.42)	MIEVDYKGEKREF
  124-  136 (21.30/12.25)	MVLVKMKETAQAF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29326 with Med37 domain of Kingdom Viridiplantae
Unable to open file!