<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29289

Description Uncharacterized protein
SequenceMPGMMAATPSTSNTQQPQLQRSYIWSGVIELMEKGKAPGDQQKTTKLLPCQVSTTSKDIEPELKADTWPSKLLMQLMPKQLISNIGGQYLKDSKSVLFHLQPSEALDHLTNVMVNGYAGCVHFNPISSPPQCDIKVLMLLYTPDKKAYLGFIPNNQVAFVDRLRSVIQQQKITQQIINKQHPATVSAAAGPPPSMPGQMSTAGMSSSGMGAMGSVPALGPANSTIVSQQMQQHAQGMMMGGGMSGGVVGGKGPRSVTQLDGLEAARQQNLEKIQQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQHYKQLEEQQRKHQLQQQLQQQLRAAGAHPTRILRPMLPTNPGLKHLLQQVTCAFTLIARPAM
Length370
PositionUnknown
OrganismBombyx mori (Silk moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Bombycoidea> Bombycidae> Bombycinae> Bombyx.
Aromaticity0.04
Grand average of hydropathy-0.419
Instability index57.11
Isoelectric point9.37
Molecular weight40476.27
Publications
PubMed=19121390

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29289
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      91.13|      17|      17|     258|     274|       1
---------------------------------------------------------------------------
  256-  271 (21.10/ 9.24)	.VT..QL.DGLEAARQQNLE
  272-  289 (24.43/11.80)	KIQ..QLqETLQAAHQQEAQ
  291-  308 (21.82/ 9.79)	KSQmdIM.SHLHAAQQQE.Q
  309-  323 (23.79/11.31)	HYK..QL.E..EQQRKHQLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     240.14|      76|     127|      40|     121|       2
---------------------------------------------------------------------------
   40-  121 (122.61/67.27)	DQQK.TTKLLPCQ.VSTTSKDIEPelkADTWPSKLLMQLMPKQLISNIGG.QYLKDSKSVLFHLQPSEaldHLTNVMV.NGYAGCV
  168-  247 (117.54/54.25)	QQQKiTQQIINKQhPATVSAAAGP...PPSMPGQMSTAGMSSSGMGAMGSvPALGPANSTIVSQQMQQ...HAQGMMMgGGMSGGV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29289 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NKQHPATVSAAAGPPPSMPGQMSTAGMSSSGMGAMGSVPAL
2) PANSTIVSQQMQQHAQGMMMGGGMSGGVVGGKGPRSVTQLDGLEAARQQNLEKIQQLQETLQAAHQQEAQFKSQMDIMSHLHAAQQQEQHYKQLEEQQRKHQLQQQLQQQLRAAGAHPTRILRPMLPTN
178
220
218
348










Molecular Recognition Features






MoRF SequenceStartStop




1) SYIWS
22
26