<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29287

Description Uncharacterized protein
SequenceMLSISSVKDSEVVRPICTISCANIIAFSSPTELSDVDGATWGGHVYVSALEWDLEGKQLLVATTVGDVSVYGQKDFLLNDWTCLYSANFPGEHIIQGAFFHNGRRVVAVDKKSDAVIPEKIQMLRFSPTLKGFGGVACEGVLVVTASGLICVAVSPGGDSRTALVATEGLRPHRDHVTAAAICYKGGSPVVALCCADGCVRCAAVTVTRAPPAAPALALQPLPAIHLLHEDPPGNPSPSVCVALESRVQRGLTYTLRVRSCRGLELPRGLGLPAAGGRRAVAVEVQRAGAPRAQGVREGVHVCPQVWQRTAVLQQEGGRAVSVCGARLPQSVPAVLLATPHAVHYKPKDSHVALISRPVTSHGAADAQAGGATPPKNTKYGPGVAPGGARCALVSCAAVSAQGGAAVLVDTHGQLHVYRLPQVWPDLLLTNPALSVQLAVSALEYAAVAGCDCLDVLMALRPGAAETVYERFTESFQRQPPAVQQYYQQSALKLRIALCRLSARLTGSGAWLTCLQTCEVVWAAASAALKLEERPDGDCEENHIEQDKLIASLEAKAEAGAELAALRVSVQRVGDIAVTALLSLSQQPHHQSHGGVCVAGGSMSGAARVGGAPPGQCLGASPETWTPLCKLRARGAQGAYIDLEYGVEPDSLKYAPEPPPYVQCETTPSLAMDSIRYMYLGGGLRPARWRGCARCGGRALAAALPARHPAHRAFDARFVSSCRSVCVHY
Length729
PositionTail
OrganismBombyx mori (Silk moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Bombycoidea> Bombycidae> Bombycinae> Bombyx.
Aromaticity0.05
Grand average of hydropathy0.085
Instability index46.35
Isoelectric point8.34
Molecular weight76548.01
Publications
PubMed=19121390

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29287
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     610.40|     115|     115|     193|     307|       1
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  138-  244 (124.89/47.56)	................CEGV..........LVVTASG...LI....CVA..VSPGGDS.......R..TALVaTE....GLR....PHRD...hvtaaaicykggspvvaLCCAD.GCVRCAAVT....VTRAP....PAA........PALALQPLPAIHLLHE..DPPGNPS.PSVCVAL
  245-  354 (163.28/64.38)	ESRVQRGLTYTLRVRSCRGLELP.....RGLGLPAAGGRRAV....AVE..VQRAGAP.......R..AQGV.RE....GVHV..CPQVW...............qrtavLQQEG.G..RAVSVC....GARLP....QSV........PAVLLAT.P..HAVHY..KPKDSH......VAL
  355-  488 (92.81/33.51)	...ISRPVTSHGAADAQAGGATPpkntkYGPGVAPGGARCALvscaAVS..AQ.GGAA.......V..LVDT.HG....QLHVyrLPQVWpdllltnpalsvqlavsaleYAAVA.GC.DCLDVL....MALRP....GAAetvyerftESFQRQP.PAVQQYYQ.................
  489-  620 (108.89/40.55)	....QSAL..KLRIALCR...LS.....ARLTGSGAWLTCLQ....TCE..VVWAAASaalkleeR..PDGD.CE....ENHI..EQDKL....iasleakaeagaelaaLRVSV.QRVGDIAVTallsLSQQPhhqsHGG........VCVAGGSMSGAARVGG..APPGQ......CLGA
  621-  727 (120.53/45.65)	SPETWTPLC.KLRARGAQGAYID.....LEYGVEPDSLKYAP....EPPpyVQCETTP.......SlaMDSI.R.ymylGGGL..RPARW.........................rGCARCGG........RAL....AAA...............LPARHPAHRafDARFVSScRSVCV..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29287 with Med16 domain of Kingdom Metazoa
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