<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29286

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMMSDQFRKVEPYSPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLPGIVDGPGQDDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYVSATPPKRHKSKHKKHKHKDGAPPGQETPLQDSSNPDTYEKKHKKQKRHDDEKERKKRKKEKKRKKQKHSPEHGGLTPNQHPLP
Length237
PositionHead
OrganismBombyx mori (Silk moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Bombycoidea> Bombycidae> Bombycinae> Bombyx.
Aromaticity0.05
Grand average of hydropathy-1.172
Instability index55.86
Isoelectric point9.98
Molecular weight26434.81
Publications
PubMed=19121390

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP29286
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.07|      23|      48|     160|     184|       1
---------------------------------------------------------------------------
  160-  182 (45.26/19.03)	KRHK.SKHKKHKH...KDGAPPGQETP
  190-  208 (28.76/10.12)	DTYE.KKHKKQKR...HDD...EKER.
  210-  235 (33.05/11.35)	KRKKeKKRKKQKHspeHGGLTPNQH.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.20|      22|      38|      86|     107|       2
---------------------------------------------------------------------------
   86-  107 (38.86/26.71)	GKKLKESLSSFLPNLPG..IVDGP
  108-  123 (18.49/ 8.79)	GQDDNSTLSSVIAKRP........
  126-  146 (27.85/17.03)	GKELLPLTSA...QLAGfrLHPGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29286 with Med19 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPLTSAQLAGFRLHPGPLPEQYRYVSATPPKRHKSKHKKHKHKDGAPPGQETPLQDSSNPDTYEKKHKKQKRHDDEKERKKRKKEKKRKKQKHSPEHGGLTPNQHPLP
2) QFRKVEPYSPKSSPRGARSPVVSRQDSSGTLKTTISL
3) SFLPNLPGIVDGPGQDDNSTLSSVIAKRPIGGKE
130
5
95
237
41
128










Molecular Recognition Features






MoRF SequenceStartStop




1) KKHKKQKRHDDEKERKKRKKEKKRKKQKH
2) MSDQFRKVEPYSPKS
3) YRYVSA
194
2
151
222
16
156