<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29282

Description Uncharacterized protein
SequenceMYQKKLCSILTTLNPDLQESSIRQYLTLTAVLTNKYKMKQLLTLLENLVNTNILQARMLCDCILTNEKLIYQNADFWIECFSLIRRIIGGVDYKGVREIMKQLAKLLTSFVESTKPCAQMVSIIGHSNMLPVVEFSGFADHLVNPWRLDPTTLKFSLKGNLPYDDELLKPQIGLIRHVLQQPYSRDMMCSMLGLQKQHKQQCIALEDQLVELMILPMEKSEQENDEDEMSPTHWCWLHLSSQVIYLILIGFASFPNIVMGLHNKLVGHDMKKGRDHLMWVLLQFISGSIQRHPLSNFIPIIKLHELLYPEKDPLPVPDYSKAHCTHQMAVVCIWMHLLKKAETEHKTMTMPPNLKVQYDFLQHLMTSNNIPTLGSDYRIALLCNAYSTNQEYYARPMGIIIETLFGNQKPLPNGSTTAPLPTVPLSMCILDSLTLHCKMSLIHSIVTHVAKLAQNKTNIPGNNMMSPALVETYSRLLVYTEIESLGIKGFINQLLPNVFKSHAWGILHDLLDMFSYRIHHVQPHYRVQLLSNIHSLAAYPQANQTQLQLCFESTALRLITSLGSSGVQLQMSRVVSEPKSLVSSESEELNRVLVLTLARGIHMAGAGSDGAAVKELLTTIMTNTPHMWSQHTLQCFPPVLVEFFNQISAQKENKQLLKKSVEEEYRKWTSMANDNDIISHFSVPGTPLFLCLLWKMIFETNRINPIAFKILERIGARALSAHLRKFCDYLVFEVTDPAGGPHIYKCVDAINDIIWKYNIVTIDRLVLCLVLRPNPDGNESQVSLYIIQLLLLHGFELRNRVQDFVKENSPEHWKQNNWYEKHLAFQRKYPEKFTPEEASGAYGAPIPVYLSNVCLRLIPVFDIVVHRHLEIHQVAKYLEQLLEHLGYLYKFHDRPITFLYNTLHYYEKKLRDKPLLKRKLVGAVLGALKDVRPAGWAATETLQNFLANTEYDNTTWVPDLNYYLSLVNRMVDSILFHKTTKQKYTMMGNSHFPNTDWRFNEYPNPSAHALYVTCVELMSLPVAPNYVGNSLLDVITKGFVVIPTTKLQLWINAIGLIMAALPDPYWTVLHERLLELTTSSEMIEWTYPYSPFQLFNLATTSDAMLENKYSLTLACAHAIWYHAGAGQIMQVPIYHIKYMFVGDTLKNEVENVIRKLRPALQMRLRFITHLNVEQINTA
Length1178
PositionTail
OrganismBombyx mori (Silk moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Bombycoidea> Bombycidae> Bombycinae> Bombyx.
Aromaticity0.09
Grand average of hydropathy-0.054
Instability index40.37
Isoelectric point7.93
Molecular weight135184.06
Publications
PubMed=19121390

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29282
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     262.84|      88|     519|     308|     607|       1
---------------------------------------------------------------------------
  510-  607 (127.53/350.60)	LLDMFSyRIHHVQPHYRVQLLSNIHSL..AAYPQANQTQLQlcfEstalRLItSLGSSGVQLQMSRVVSePKSL..VSSESEEL..NRV.LVLTLARGI.HMAGAG
 1031- 1126 (135.31/24.65)	LLDVIT.KGFVVIPTTKLQLWINAIGLimAALPDPYWTVLH...E....RLL.ELTTSSEMIEWTYPYS.PFQLfnLATTSDAMleNKYsLTLACAHAIwYHAGAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.02|      60|      86|     348|     413|       2
---------------------------------------------------------------------------
  321-  412 (80.79/65.04)	KahcthqmavvciwmhllkkaetehktMTMPPNLKVQYDFLQHL..MTSN..NIPtlGSDYRIALLCNAYSTNQEY.YARPMGIiieTLFGNQKpLP
  413-  496 (78.23/45.76)	N.......gsttaplptvplsmcildsLTLHCKMSLIHSIVTHVakLAQNktNIP..GNNMMSPALVETYSRLLVYtEIESLGI...KGFINQL.LP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.94|      16|     430|     187|     213|       6
---------------------------------------------------------------------------
  187-  202 (31.96/10.91)	MMCSMLGLQKQHKQQC
  620-  635 (30.98/10.15)	IMTNTPHMWSQHTLQC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.65|      21|      75|     675|     695|       8
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  675-  695 (40.77/23.78)	NDIISHFSVPG.TPLFLCLLWK
  751-  772 (33.88/18.59)	NDIIWKYNIVTiDRLVLCLVLR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29282 with Med23 domain of Kingdom Metazoa
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