<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29280

Description Uncharacterized protein
SequenceLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSTVLMAISKVRLRQLLAEGAAWPTVAFLSPCSCHGRAEECIGLCRALMSALNWLLRCAAFYAEKVKEMLEQVAAEGQMKMCLERLEKMLGSTKNRALIHIAQLEETSSWNTVEQSLLKLEESLNGLSNSTLRSQADDCISLIKSIPTMLSVRSEQLNKTGFPTVHAVVLLEGTMNLTGEIQPLVEQLMMVKRMQRIPSPLFMLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVELKNYPHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCNCMSLLLQECSKQGLLSEANMTNLTDKRKADREDAPQLQSAENANIQPNPRLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKFIKLNEFTKHISTENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFETWMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQINWHEVCLSISAAILEILNAWENSVLTFESIQKITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLATPLYGDNTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTIPYWNLLPPKKPIKEVLTSVFTKVLEKGWVDSRSINIFDTLLHMGGV
Length695
PositionTail
OrganismMeleagris gallopavo (Wild turkey)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Phasianidae> Meleagridinae> Meleagris.
Aromaticity0.06
Grand average of hydropathy0.038
Instability index48.40
Isoelectric point5.76
Molecular weight77620.80
Publications
PubMed=20838655

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29280
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.75|      21|     132|     231|     253|       1
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  232-  253 (34.86/29.24)	SPLFMLEIWKaCFVGLIESPEG
  260-  280 (36.88/20.03)	TAFTFLKIPQ.VLVELKNYPHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.76|      27|      30|     418|     447|       2
---------------------------------------------------------------------------
  421-  447 (44.14/38.07)	KFIKLNEFTKHISTEN..SKSAPVRALLF
  450-  478 (42.63/25.47)	SFLMLCHVAQTYGSEVilSESRPADEVPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.74|      50|     138|       7|      59|       3
---------------------------------------------------------------------------
    7-   59 (77.31/71.72)	EQAMIG..PSPNPLILSYLKyAISSQMVSYSTVLMAISKVRLRQLLAEGaaWPTV
  147-  198 (77.43/59.40)	EQSLLKleESLNGLSNSTLR.SQADDCISLIKSIPTMLSVRSEQLNKTG..FPTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.43|      19|      30|     289|     308|       4
---------------------------------------------------------------------------
  289-  307 (34.59/22.33)	NCAFEFLL...KLTPLLD..KADQ
  320-  343 (24.84/ 9.54)	ECSKQGLLseaNMTNLTDkrKADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.65|      13|     130|     529|     556|       5
---------------------------------------------------------------------------
  529-  546 (15.11/36.25)	HEVClsiSAAILEIlnAW
  565-  577 (26.54/ 8.57)	GKVC...SMAVCAV..AW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29280 with Med24 domain of Kingdom Metazoa
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