<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29276

Description Uncharacterized protein
SequenceMVVPTLDMPAQPMGMVADVVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDFGGDYGGTQYSLVVFNTVDCAPESYVQCHAPTSSAYEFVTWLDSIQFVGGGGESCSLISEGLSTALQLFDDFKKMREQIGPTHKVCILICNSPPYLLPAVESTTYSGYTTENLVQKIGERGIHFSIISPRKLPALRILFEKAVTGGMLEVQLKDYSQDPRHMILIRGMVLPVGGGTTANPLQPKQTVPQTQLPPVPAQLPAAPPQTMPAVSQPYQVAASTTLTAAQAAAQSAVEAAKNQKAQGTRFTPMNPMQPAFNQAPPQTLQAGSVPAMPQKLPVSSPSSLVSTVTTGSGLLVQPPVQAPPQSGASTMPSVVPPMTVNQPSQPQIGATQQSVTNKVMAWSGVLEWQEKPKPASVDSNTKLTRSLPCQVYVNQGENLKAEQWPQKLIMQLIPQQLL
Length455
PositionUnknown
OrganismAnolis carolinensis (Green anole) (American chameleon)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Lepidosauria> Squamata> Bifurcata> Unidentata> Episquamata> Toxicofera> Iguania> Dactyloidae> Anolis.
Aromaticity0.07
Grand average of hydropathy-0.122
Instability index55.18
Isoelectric point6.00
Molecular weight48779.47
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29276
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     215.61|      31|     110|     260|     290|       1
---------------------------------------------------------------------------
  150-  179 (37.11/15.26)	PPY....LL.....PAV........eSTTY..SG.....YTTENLVQKIGERGI
  185-  214 (31.31/11.75)	SPR....KL.....PAL.........RILFEKAV.....TGGMLEVQLKDYSQ.
  240-  258 (21.93/ 6.09)	PKQ....TV.....PQT.........QLP.PVPA.....Q..LPA.........
  260-  290 (53.50/25.14)	PPQ....TM.....PAV.........SQPYQVAA.....STTLTAAQAAAQSAV
  317-  357 (36.07/14.63)	PPQ....TLqagsvPAM.........PQKLPVSSpsslvSTVTTGSGLLVQPPV
  360-  402 (35.68/14.39)	PPQsgasTM.....PSVvppmtvnqpSQP.QIGA.....TQQSVTNKVMAWSGV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29276 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAQSAVEAAKNQKAQGTRFTPMNPMQPAFNQAPPQTLQAGSVPAMPQKLPVSSPSSL
2) GTTANPLQPKQTVPQTQLPPVPAQLPAAPPQTMPAVSQPYQV
3) TVTTGSGLLVQPPVQAPPQSGASTMPSVVPPMTVNQPSQPQIGATQQS
284
232
344
341
273
391










Molecular Recognition Features






MoRF SequenceStartStop




NANANA