<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29275

Description Transcription elongation factor A1
SequenceMSAEDEIIRIAKKMDKMVQKKNAAGALDLLKELKNMPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSNDKDSEDKKKEAASSSQNSPEAREESSSSSNSSNRKEESNTGSDAFISSFPRAPITSDSVRMKCREMLAAALKTGDDYIAIGADEEELGSQIEEAPIFQELKNTDMKYKNRVRSRIANLKDTKNPNLRKNVLCGNIAPDRFAKMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFSCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
Length305
PositionUnknown
OrganismAnolis carolinensis (Green anole) (American chameleon)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Lepidosauria> Squamata> Bifurcata> Unidentata> Episquamata> Toxicofera> Iguania> Dactyloidae> Anolis.
Aromaticity0.04
Grand average of hydropathy-0.810
Instability index50.93
Isoelectric point8.64
Molecular weight34094.38
Publications









Function






Annotated function


GO - Cellular Component
nucleolus	GO:0005730	IEA:Ensembl
transcription factor TFIID complex	GO:0005669	IEA:Ensembl

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29275
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.98|      22|      27|      87|     113|       1
---------------------------------------------------------------------------
   80-  101 (34.86/14.98)	DGPSNDKDSEDKKKEAASSSQN
  107-  128 (34.11/25.93)	EESSSSSNSSNRKEESNTGSDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.87|      25|      29|     210|     238|       2
---------------------------------------------------------------------------
  210-  234 (43.22/33.05)	LRKNVLCGNIAPDRFAKM..TAEEMAS
  240-  266 (37.65/18.90)	MRKNLTKEAIREHQMAKTggTQTDLFS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29275 with Med26 domain of Kingdom Metazoa
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