<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29235
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDHPEDFAPEAFFDQNPLQQIQHIDPATDLGSVPNVSLPPNLAVIEQLHRRWYSGCLERVAWSRLGHLASISEDGCTVYLECLLYEHDAKTWRLNERHALTTIFEDAVSLAWSSTGAELAVVDIKGRVWVYTASHVAINRLVLGRRGDLDEPGESSQPIGMTWLNQDRQDRPKNVVVLAAKNDSRWVHTNARAKPLGPYWPRAVVVVHRSGLLTLCFQRADGQYSRINTHLSPHDNTLYTHASFAPTVEGKLLIALHSFKHQISVRFLSIDWTGVRQSPGTLPVLTVDFVSAKVASQPTGSATLGDVYDPDSWRLTHVEVVPTSDVEKAVQTPPTILAVASGINRGVNITDHGYLVSSMIKRWTVTLVEQKLHPLFDQLPSKGTNKTTSPPVYTFQRQPDKEEQIVTRVHPMEGHAALVVTTQEGRTDFLNPEDLSPVSYAASVTETSSLAQAGFIFPFVPNAPFPAFSPSACIRADITPEGKTQIVTMEHTLDHGQEAQQPLDPNIDVAIAALNLSFARACWTNATIDDILMCALHNIPASFRPVIVSSMYRALFRDNEFVSERTQGSELERVFHKQVMGRVMAYHAGLTAYCPQLPTIAPTEGRTGWSLSAQWAWMANNIRHTATLLFMNLRDVQNLNLVMTQDFTDMLCSNLRWGLSVVRFIISTILEVGDRETNPDMFDSKDIGRVGDTKGDGSQGLVALLLNIHCSRQFLVAFVRAVRAYAKSTEPKSQHHVQVLQCIQQQTVNKGITFPAVEALLEARWPSPGDIEGDIPGTAVRQLDMMATGTVHPAYEGTIKLILNKLLNSPAGLRAKNLIDRLKLYTDHVDLDYVFLNRHVLGHLEDQSKETPVIYDVHRKRPILKGGPDPSGTGVLMVRRCVRCGSFSEDINVALKEWPKQVGGLLARCVCDGQWVLEAWKGDGE |
Length | 925 |
Position | Tail |
Organism | Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656) (Black yeast) (Wangiella dermatitidis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Exophiala.
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Aromaticity | 0.08 |
Grand average of hydropathy | -0.179 |
Instability index | 42.76 |
Isoelectric point | 6.22 |
Molecular weight | 102750.83 |
Publications | PubMed=24496724
PubMed=28348446
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP29235
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 838.63| 341| 464| 7| 398| 1
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7- 259 (296.15/254.08) ......................................................................................................................................................................................................................FAPEAFF..DQNP..LQQIQHIDPATDLGSVPNVSLPPNLAV.IEQLH...RR..WYSGCLERVawsrlghlasisedgctvyLECLLYEHDAKTWRLNERHALTTIFEDAVSLAWSSTGAELAVV...DIKGRVWVYTASHVA.......INRlVLGRRGdldepgeSSQPIGMTWLNQD.R..........QDrPKNVVVLAAKNDSRWVHTNAR..............................akplgpyWPRAVVVVHRSGLLTL........CFQRAD.GQYSRINTHLSPHDNTLYTHASFAPTVEGKLLIALHSF
260- 398 (82.94/84.40) KHQISVRFLS.IDWTGVRQSPgTLPVLTVdFVSAKvasQPTGSATLGDVydPDSwRLTHVEVVPTSDVEKAVQ.TPPTI....LAVASGInRGVNITDHGYLVSSMIKRWTVTLVEQKLHPLFDQlpSKGTnkttsPPVYTFQRQ........................................................................................................................................................................................................................................................................................................................................................................................................
468- 725 (263.30/163.02) .................................................................................................................................................pdkeeqivtrvhpmeghaalvvttqegrtdflnpedlspvsyaasvtetsslaqagfifpfvpnapfpaFSPSACIraDITPegKTQIVTMEHTLDHGQEAQQPLDPNIDVaIAALNlsfARacWTNATIDDI...................LMCALHNIPASFRPVIVSSMYRALFRDNEFVSERTQGSELERVfhkQVMGRVMAYHAGLTAycpqlptIAP.TEGRTG.......WSLSAQWAWMANNiRhtatllfmnlRD.VQNLNLVMTQDFTDMLCSNLR.....................................WGLSVVRFIISTILEVgdretnpdMFDSKDiGRVGDTKGDGSQGLVALLLNIHCSRQFLVAFVRAVRAY
732- 914 (196.23/122.49) KSQHHVQVLQcIQQQTVNKGI.TFPAVEA.LLEAR...WPSPGDIEGDI..PGT.AVRQLDMMATGTVHPAYEgTIKLIlnklLNSPAGL.RAKNLIDRLKLYTDHVDLDYVFLNRHVLGHLEDQ..SKET.....PVIYDVHRK..............................................................................................................................................................................................................................................................................................rpilkggpdpsgtgvlmvrrcvrcgsfsedinvalkeWPKQV.....GGLLAR........CV..CD.GQ....................................
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