<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29224

Description Uncharacterized protein
SequenceMFAGGGGDKNVKREKAPVVGGPHAHSNGCVVCGSDQNGDSILLCDGCDGEYHTYCLVPPLTEIPAGDFYCKKCTDANLAKQRKAEGGAVAAPAPSAPTASVVAGVPSASVAAPAAPAKPTILMKESKYRGVSKVSMKGVKKPFVAKLWQGSKYLQLGTFGSEIEAAHAYDKAALMHYGKSAQLNFPHLHDSFIRPEVAFSVRPQNPSGQTAAASAPLIPGRPASADMYPTSGRGRGRGRGRGRGRGRGKRSQDSPDAQGTAEYLEAKRRKMEISGSSTGSSNQKASNVPTKKYLGVQVHRVYAHAQIHVNGSVVNLGTFPTAKDAAMAYDKAALRSFGGPIGSSDARPDEIVLNFPEKRDEYLRQIIEVEKQKMARQASVSSYASRSAQNAKYNLSIMKLNSWMSKLQRSVKMVEASQRVQWGLHPTPLKIEEQEGKEEGDATSVSSLVKTEIFGSGPTIKKEFTTRDQKLRQSKEEIQDAISLMVEELKIYAADAPVDPLFQPPPRCAPILDLLSTSRHLKLISAINDLAHLKVKVDVRDPTSVVDGRFESKLQAVVDYRARLQMSSSNEKQKLAHFMRDLETASLAPGSNSTTTAATTELGSQGAKKTDLLKYAKYVKRKVLLPKPVALNTQNQELPKDTSKQADGTDEEMKEEPTGITGKPGEVSDMDVKMEAVAAEEQKHPESTTEDTAAQESATSIASTGPDVQTPATTAEADKNSSTDGQSGGDQLGVGGDAAAQTVAHGAPNDGAARTVTADSSGPSETTATGNKTEESQPEVSKADNDKSDKLEDKAEKEHSEGSKAKSTSEESAEETEDKAEASLAEEKPETEEADEDKADADKSQEDAHTSAKTNNDAIMEDAADDDASTAVIAPKEGFEWQFCLAVQVPPAKDSPTAAEDVWRLLQISSKPQTGEFVEGVFLTEKEVSEMEVSEEEVCSSSAATDGKTAWMEHLRQLHVEENQVRQHIQRETNHQHALQGIVKIEQDRLNEISVVYREAMNKLDTKTAFALKNHARVSQDAQLVKLMQHSFNPILGDLLDKCEEALLNCFQKLSLRFEDFAQEFEYYRNALLSLTQSPKAEITEGYSSPVDAADLVMDDDSVTIKRENIEKVTGQSADAMPTTSGEIVEIAKDNEVVSIEDDDEFDDLGDSSGLRQAYSTFYMGEMEALWKERSSSLEMVQAIQRSLLNNVIRVDTPIENPVHLQKPSETDVSDDAEMKVEEEAVENKTQESVDMSIQPVEKATEPDTNSRESQEKATEETAEVDTQKKTDTATSADTPEVEPSKANAFQVSSEVVVKTEPQEVAGKFRREHELREAVESCLAQWQRIQWPEELNLTFLTPTSLEPPSISPAVKSEQVKSQSLTASDEEEAEFNSSYSVMDELKRVMIDLTQDQVIPVPPPVEPTTLVMYHPVFINHQTPKNHPECPERMDRVVNILNTLVKKHQETLKLDRLAMSPEELCPPETTLLMVHSPTYLRQLKERSIEAGSQSASSPTAASPSSRALVFESDSGIREETPKRDGRKKNGRPPLVGAFGAASLEQNGVELDTFVSSKSWDVARAAAVIGATHARLYPWIRKVAVLDWDIHHGNGTEELLKDDPDAFFASIHLYSSGRYFPGTGKSCETGNRINVALENTGAGSGSQAFRSALELKVLPAIRAFQPDIIFISAGFDGHRDDILGGVAAVNNPNVPAGYVEEDYAWATVEVLKLAAEVCDGRVVSVLEGGYDVRRETNSLAKSVAAHVVAISDYEAARRKAVNSATADVEMKEEEGADKTSSTSIKTEQIKKEPPSLLEKLLATNLDDGNVIIINDEDNEEEGGDAAHEVHDGDDAEDEDTGEEEDGDVAMEDENLRSQKPIASFANLLRWTLPVMSDPFYLADILLGRVGVLRSTAESIILELCEAQAKLEPGQASDDALRLAIKNKLERVQTNLKLLRKLVPEFDGKTKPIESVNQTHRNLMLEYHWKNQVQDMGAKAQAVYLEQLGGAFPRLEMLGDGRCPPTPSSLFVPKSHKRGRVFDPFGEKQPATLNEMMDYMMAKNRKLKFFKHAETTRGGRRVIKSIKCEINKEVTVHLSFCPPIPENGPNGETGVAASPMTPSTPTSPAFAGGRLRSTRNKHKKQLQQLVKKKKGDMLSKAKLAAEEATKMEMEELKQRISEAREAIKEQEQARAAGLQVTKYIQRLSILPYNEEAPLGAWSESSHNLFRLVTLHGRKALDHFRKQHPETCFYHLFTWLGYYDKIYQTPCSFCKKLLVKEGEEWAYVPPSFRDYANGQAFHSKCLPIE
Length2283
PositionTail
OrganismPhytophthora ramorum (Sudden oak death agent)
KingdomOomycetes
LineageEukaryota> Sar> Stramenopiles> Oomycota> Peronosporales> Peronosporaceae> Phytophthora.
Aromaticity0.05
Grand average of hydropathy-0.593
Instability index49.31
Isoelectric point5.24
Molecular weight250306.37
Publications
PubMed=16946064

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW
DNA-binding transcription factor activity	GO:0003700	IEA:InterPro
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29224
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.26|      35|     157|     155|     196|       1
---------------------------------------------------------------------------
  155-  196 (56.94/49.41)	QLGTFGSEIEAAHAYDKAALMHYGKsaqlnfPhLHDSFIRPE
  315-  349 (66.31/39.08)	NLGTFPTAKDAAMAYDKAALRSFGG......P.IGSSDARPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     467.42|     143|     247|    1173|    1331|       2
---------------------------------------------------------------------------
  663-  754 (112.06/54.95)	............................................KPGE..VSD...MDVKMEAVaaeEQKHPESTTED...TAAQESATSIASTGP.......DVQTPAT..TAEADKNSSTDGQSGGDQLGVGGDAA.........AQTVAHGAPNDGAAR...........................
 1173- 1331 (219.34/151.68)	ERsssLEMVQAIQRSLlnnvirvdtpiENP..........VHLQKPSETDVSDDAEMKVEEEAV...ENKTQESVDMS...IQPVEKATEPDTNSR.......ESQEKATEETAEVDTQKKTDTATSADTPEVEPSKANAFQ...VSSEVVVKTEPQEVAGKfrREHELREAVESCLAQWQR....IQW
 1333- 1407 (46.23/18.78)	EE...LNLTFLTPTSL...........EPPsispavkseqVKSQSLTASD.EEEAEFNSSYSVM...DELKRVMIDLTqdqVIPVPPPVEPTT................................................................................................
 1491- 1584 (89.78/42.04)	......................................................................................SASSPTAASPssralvfESDSGIREETPKRDGRKK.....NGRPPLVGAFGAASLEqngVELDTFVSSKSWDVA....RAAAVIGATHARLYPWIRkvavLDW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.78|      23|     164|     898|     920|       3
---------------------------------------------------------------------------
  844-  862 (28.58/14.93)	SQEDA....HTSAKTNNDAIMED
  863-  881 (31.31/17.15)	AADDDASTAVIA..PKEG.F.EW
  898-  920 (39.89/24.12)	AAEDVWRLLQISSKPQTGEFVEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.15|      47|    1329|     360|     471|       4
---------------------------------------------------------------------------
  415-  471 (65.92/123.48)	EASQRVQWGLHPTPLKIEEQEGkeeGDATSVSSlVKTEifgsgpTIKKEFTTRDQKL
 1750- 1796 (77.23/25.60)	EAARRKAVNSATADVEMKEEEG...ADKTSSTS.IKTE......QIKKEPPSLLEKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     217.85|      76|    1344|     756|     839|       7
---------------------------------------------------------------------------
  756-  839 (106.39/72.19)	VTADSSGPSETTA...TGNKTEESQpevskadNDKSDKLEDKAEKEHSE.gSKAKSTSEESAEETEDKAEASLAEEKPETEEADEDKA
 2090- 2170 (111.45/59.54)	VAASPMTPSTPTSpafAGGRLRSTR.......NKHKKQLQQLVKKKKGDmlSKAKLAAEEATKMEMEELKQRISEAREAIKEQEQARA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.23|      47|    1344|     217|     273|       8
---------------------------------------------------------------------------
  223-  273 (73.90/51.76)	ASADMYpTSGRgrgRGRGRGRGRGRGKRSQDSPDAQGTAEYLEAKRRKMEI
 1605- 1651 (79.33/33.83)	ASIHLY.SSGR...YFPGTGKSCETGNRINVALENTGAGSGSQAFRSALEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     146.87|      37|      37|     575|     611|       9
---------------------------------------------------------------------------
  530-  574 (38.78/20.64)	LAHLkvkvdVRD..PTSVVDGRFESKLQAVVDYrarlqMSSSNEKQK
  575-  611 (57.51/34.36)	LAHF.....MRDLETASLAPGSNSTTTAATTEL.....GSQGAKKTD
  612-  647 (50.58/29.29)	LLKY.....AKYVKRKVLLPKPVALNT.QNQEL.....PKDTSKQAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.08|      32|      37|    1069|    1105|      11
---------------------------------------------------------------------------
 1069- 1105 (45.74/35.88)	RNALLSLT.QSPKA.EITEGysspvDAADLVMDDDSVTI
 1107- 1140 (42.34/22.21)	RENIEKVTgQSADAmPTTSG.....EIVEIAKDNEVVSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.38|      20|     107|      94|     119|      12
---------------------------------------------------------------------------
  100-  119 (36.01/13.45)	SVVAGVPS...ASVAAPAAPAKP
  200-  222 (32.37/10.74)	SVRPQNPSgqtAAASAPLIPGRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.72|      25|     533|    1447|    1471|      13
---------------------------------------------------------------------------
 1447- 1471 (44.92/25.73)	ETL..KLDRLAMSPEELCPPETTLLMV
 1981- 2007 (42.80/24.15)	EQLggAFPRLEMLGDGRCPPTPSSLFV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29224 with Med27 domain of Kingdom Oomycetes


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IIINDEDNEEEGGDAAHEVHDGDDAEDEDTGEEEDGDVAMEDENL
2) KQKLAHFMRDLETASLAPGSNSTTTAATTELGSQG
3) LKERSIEAGSQSASSPTAASPSSRALVFESDSGIREETPKRDGRKKNGRPPLVG
4) LTFLTPTSLEPPSISPAVKSEQVKSQSLTASDEEEAEFNSS
5) PKPVALNTQNQELPKDTSKQADGTDEEMKEEPTGITGKPGEVSDMDVKMEAVAAEEQKHPESTTEDTAAQESATSIASTGPDVQTPATTAEADKNSSTDGQSGGDQLGVGGDAAAQTVAHGAPNDGAARTVTADSSGPSETTATGNKTEESQPEVSKADNDKSDKLEDKAEKEHSEGSKAKSTSEESAEETEDKAEASLAEEKPETEEADEDKADADKSQEDAHTSAKTNNDAIMEDAADDDASTAVI
6) RPEVAFSVRPQNPSGQTAAASAPLIPGRPASADMYPTSGRGRGRGRGRGRGRGRGKRSQDSPDAQGTAEYLEAKRRKMEISGSSTGSSNQKASNVPTK
7) SFCPPIPENGPNGETGVAASPMTPSTPTSPAFAGGRLRSTRNKHKKQLQQLVKK
8) VDTPIENPVHLQKPSETDVSDDAEMKVEEEAVENKTQESVDMSIQPVEKATEPDTNSRESQEKATEETAEVDTQKKTDTATSADTPEVEPSKANAFQVSSEVVV
1807
572
1480
1337
626
194
2074
1195
1851
606
1533
1377
873
291
2127
1298










Molecular Recognition Features






MoRF SequenceStartStop




NANANA