<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29216

Description Uncharacterized protein
SequenceMSTITYASSASTSATSTTSSYCICSSSFFWEVVGSSSGSAPNASDSRSPSNSVSNASKMPSGGGMGGLFANGLPTKPSDNKKKPFVPPSSISSRPPAASSSAAPPPPPPPPPPPPPPPPPPATSAAPPPPPPPPSQPKPIDQPVNKPSLPAVPPTPPTIHKPQMPSTAPNPPRKEAFQTMRPGRTENMVKPPLRRSGSSEDIPCGPRSIQRPTVPPPSRPMAPPPPPPTSISRIAPSIPSNEDVPPPPPPPRSASRSGAKHRFNAEECTNVYGRTCEGETAYQGCHATENEYNSAQNKMDDASQNFRAALNFVESTLSSNMAYLSNMGLAAQCEQSLHSELASLNKFHFHKERTNGLT
Length358
PositionHead
OrganismPristionchus pacificus (Parasitic nematode)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.752
Instability index86.35
Isoelectric point9.30
Molecular weight37475.56
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29216
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.22|      20|      21|      95|     114|       1
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   95-  114 (45.04/10.78)	PPAASSSAAPPPPPPPPPPP
  118-  137 (42.18/ 9.51)	PPPPATSAAPPPPPPPPSQP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.38|      19|      20|     215|     233|       2
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  215-  233 (43.26/11.43)	P..PPSRPMAPPPPPPTSISR
  236-  256 (34.11/ 7.24)	PsiPSNEDVPPPPPPPRSASR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.88|      22|      27|      34|      60|       3
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    9-   30 (36.50/ 9.28)	SASTSATSTTSSYCICSSSFFW
   39-   60 (37.38/17.66)	SAPNASDSRSPSNSVSNASKMP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.60|      21|      27|     142|     164|       4
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  142-  162 (39.71/14.06)	QPVNKPSL......PAVPPTPPTIHKP
  186-  212 (31.89/ 6.16)	ENMVKPPLrrsgssEDIPCGPRSIQRP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29216 with Med11 domain of Kingdom Metazoa
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