<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29212

Description Uncharacterized protein
SequenceMDKTKHDPEFVPPGDDDWPSQVEQRIFVKCQSKDEYMSSITTVINAMKYTSKSSDAGPSTSGTFQGSSFLTPLREYGPDEGNEFQKREKRFRITPKRRSNAGIGPRSARWSPHSPVPMEYASQTPSANTTHMPRPGSLSLQAPWAGPVEDSGGRPETSPWLSDQSTPYNILDAATGMTPRRDSLHDYFLPPQGPIRKAAMQQQALLVGNSSQSLASRWPGGDHPTAANPSLEGEATSHSALPDDEVKKQLMQRHLQDYYLQDYSGTPGTSTSGSHPIHGGGQMGYDLPPSYMPPQQQQQSPMQFNYMDRSSVYESMKMPSDDESVPKAKRDPEGKWIEEDFESETDGSSGAARKSAEESSESETEIETIRQQIIDITKDKATSRNRNRSRQRKLYALPSATKSTFVSKFEEDFAAKRILGVGKVGCVFSAESILDCSEYAVKRITVYSSEVVFEKVLREVRAISQLDHPAIVRCHGTWMEKPPRGWQRPWECTSKTDIFALGLIFAECCVVMTDEEREISRDNFEREIKEFNKYRNRVWSNLLSAIPEENNVSSARSRTKKEHKKEHQKDMKAWAGQLEKWNNELKNDVNFLEQEVSYYKELMIEYGDIMKNMM
Length614
PositionTail
OrganismPristionchus pacificus (Parasitic nematode)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy-0.880
Instability index66.00
Isoelectric point5.92
Molecular weight69484.73
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29212
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.01|      16|      86|      93|     108|       1
---------------------------------------------------------------------------
   70-   89 (23.10/11.76)	LTPLREYGPDEGnefqKREK
   93-  108 (27.91/15.69)	ITPKRRSNAGIG....PRSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.26|      37|      69|     152|     189|       2
---------------------------------------------------------------------------
  152-  189 (65.71/46.30)	GGRP.ETSPWLSDQSTPYNIL..DAATGMTPRRdSLHDYFL
  221-  260 (55.56/33.92)	GDHPtAANPSLEGEATSHSALpdDEVKKQLMQR.HLQDYYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.56|      15|      17|     113|     127|       4
---------------------------------------------------------------------------
  113-  127 (29.00/14.93)	HSPVPMEYASQTPSA
  131-  145 (30.56/16.08)	HMPRPGSLSLQAPWA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29212 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MKYTSKSSDAGPSTSGTFQGSSFLTPLREYGPDEGNEFQKREKRFRITPKRRSNAGIGPRSARWSPHSPVPMEYASQTPSANTTHMPRPGSLSLQAPWAGPVEDSGGRPETSPWLSDQSTPYNILDAATGM
2) PRRDSLHDYFLPPQGPIRKAAMQQQALLVGNSSQSLASRWPGGDHPTAANPSLEGEATSHSALPDDEVKKQLMQRHLQDYYLQDYSGTPGTSTSGSHPIHGGGQMGYDLPPSYMPPQQQQQSPMQFNYMDRSSVYESMKMPSDDESVPKAKRDPEGKWIEEDFESETDGSSGAARKSAEESSESETEIETIRQQIIDITKDKATSRN
47
179
177
385










Molecular Recognition Features






MoRF SequenceStartStop




1) FQKREKRFRIT
2) LHDYFL
3) LTPLREY
4) WIEED
5) YYLQDY
84
184
70
336
258
94
189
76
340
263