<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29211

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSGEFGNASPNPLSQPSELLGSMDLLSVYDLSNSYNKFCSPQGMKRIAKEDLSSFLPHLYGEFNWQRGQEISWLKMLIEKPPITGKEIVPLNSSAMASFKLQPGIVDEPYRSLFDTGYEVKDGGQKDTKKEKRKLKMSIDPLEEDCIDNWAMDGNAPDMGSDEEGGTKKKKKKSDKDREERKERKKEKKEKKEKKKKEKEHN
Length202
PositionHead
OrganismPristionchus pacificus (Parasitic nematode)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-1.186
Instability index43.65
Isoelectric point8.60
Molecular weight23110.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29211
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.28|      21|      24|      16|      38|       2
---------------------------------------------------------------------------
   16-   38 (28.34/26.95)	PSEL..LGSMDLlSVYdLSNSYNKF
   41-   63 (32.94/20.65)	PQGMkrIAKEDL.SSF.LPHLYGEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.83|      10|      19|      81|      99|       3
---------------------------------------------------------------------------
   81-   93 (14.31/27.83)	PPITGKeivPLNS
  103-  112 (19.52/ 6.34)	PGIVDE...PYRS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29211 with Med19 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CIDNWAMDGNAPDMGSDEEGGTKKKKKKSDKDREERKERKKEKKEKKEKKKKEKEHN
146
202










Molecular Recognition Features






MoRF SequenceStartStop




1) LEEDCIDNWAMD
2) TKKKKKKSDKDREERKERKKEKKEKKEKKKKEKEH
142
167
153
201