<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29205

Description Uncharacterized protein
SequenceMNPEAVPPMSPLLVRQQLLAEYKSDKGAPMDKQFGPLPDWPFPEPPSNNKHWHIDVNNDLRHHLVGKVVNSIFPSSDPAAKHDQRVKDLINYARKLEKDMFENADDTLSVIKMNNGAMNPAAAMLPQQANGPIWSPPHQPSIHKDWHSDVTNDLRHHLVGKLMQAVFPSTDLAAMHDPRINDIINYARKIEKDMFENADREEYYHLLAEKLYKIQKELQEKKKKRLEEIQLRNSTRTVELTRGTDGKFGIIHQGASIIEARMGTSAEEKGVKKGDEIISINDIRVETFTHAEIEKFLGGAGANK
Length304
PositionTail
OrganismPristionchus pacificus (Parasitic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Diplogasteromorpha> Diplogasteroidea> Neodiplogasteridae> Pristionchus.
Aromaticity0.06
Grand average of hydropathy-0.711
Instability index47.24
Isoelectric point6.54
Molecular weight34496.82
Publications
PubMed=18806794

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-KW

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29205
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.30|      17|      30|      35|      51|       1
---------------------------------------------------------------------------
   35-   51 (35.66/20.15)	GPLPDWPFPEPPSNNKH
   66-   82 (29.00/15.17)	GKVVNSIFPSSDPAAKH
  132-  145 (20.99/ 9.18)	...PIWSPPHQPSIHKD
  160-  176 (28.65/14.91)	GKLMQAVFPSTDLAAMH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.29|      37|      92|      52|     105|       2
---------------------------------------------------------------------------
   52-  105 (66.62/40.35)	WHIDVNNDLRHHLVgkvvnsifpssdpaakhDQRVKDLINYARKLEKDMFENAD
  146-  199 (67.67/41.08)	WHSDVTNDLRHHLVgklmqavfpstdlaamhDPRINDIINYARKIEKDMFENAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.30|      30|      45|     219|     248|       3
---------------------------------------------------------------------------
  219-  248 (48.93/37.46)	QEKKKKRLEEIQLRNSTRTVELTRGTDGKF
  267-  296 (49.37/37.86)	EEKGVKKGDEIISINDIRVETFTHAEIEKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29205 with Med15 domain of Kingdom Metazoa
Unable to open file!