<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29202

Description Uncharacterized protein
SequenceMGVLSQGGAQQQQQGMYQQQQDDPSQQQGSQPMQMSYGISGMGQSNDLYMQQGQHYPMNAAPSGMNPHVYNSISSSLQARSPYSMGGMGGPQSIPQPMSVNPLSVPPQGPGSVSGQGPMSVPQQGPASVQGPMSVPQQGPCSVPGQGPLSVPQPLSMAGQGPLSVPQPLSMAGQGPLSVPQPGSVGQSGDSLGIGGLTVPGVMHSNQGPSPSSLSIPSHMGSYIDGQGRSPIGPGSMSGPSPCALPQGTSPSLGNPLSHGGPQSISAFNPSTPHNVPSQSQEKKDEESERYDGIFLLDPMQQSKQLITKDLRVSFSEMNKSMGEVLRNRDNVSVEQNEKYNRDYNEFMAVCDQVEQALTMVLETSKMMSKLDRSYTPDGGNTAGRKMGGKRVKPTTKIGTASKRLRLDSNWSEEIPSDKDDDFDARHMHGDSSGDEGTRHQNIFCKKRNKITSSEKAQMLNEPTGDIENLTPFGVLRYDRAVTSAGNFLKAGFGTN
Length496
PositionTail
OrganismPristionchus pacificus (Parasitic nematode)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.720
Instability index68.83
Isoelectric point6.00
Molecular weight52610.04
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29202
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     222.96|      27|      27|      95|     121|       1
---------------------------------------------------------------------------
   79-  106 (48.56/15.81)	ARSPYSMGGMGgPQSIPQ...PMS..VN.........PLSVP
  107-  136 (47.62/15.37)	PQGPGSVSGQG.PMSVPQ.qgPAS..VQ........gPMSVP
  137-  155 (33.28/ 8.64)	QQGPCSVPGQG.PLSVPQ...PL...................
  170-  200 (29.97/ 7.09)	.....SMAGQG.PLSVPQ...PGS..VGqsgdslgigGLTVP
  206-  230 (27.75/ 6.05)	NQGPSPSS.....LSIPS...HMGsyID.........GQGRS
  231-  258 (35.79/ 9.82)	PIGPGSMSGPS.PCALPQgtsPSL..GN.........PLS..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.27|      20|      21|      22|      42|       2
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   22-   42 (36.28/15.69)	DDPSQQQGsQPMQMSYGISGM
   46-   65 (39.99/14.61)	NDLYMQQG.QHYPMNAAPSGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.48|      32|      51|     266|     316|       3
---------------------------------------------------------------------------
  268-  302 (53.02/57.50)	FNPSTPH......NVPSQSQEKKDEEserYDGIF.LLDPMQQ
  318-  356 (46.45/15.81)	MNKSMGEvlrnrdNVSVEQNEKYNRD...YNEFMaVCDQVEQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29202 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MGVLSQGGAQQQQQGMYQQQQDDPSQQQGSQPMQMSYGISGMGQSNDLYMQQGQHYPMNAAPSGMNPHVYNSISSSLQARSPYSMGGMGGPQSIPQPMSVNPLSVPPQGPGSVSGQGPMSVPQQGPASVQGPMSVPQQGPCSVPGQGPLSVPQPLSMAGQGPLSVPQPLSMAGQGPLSVPQPGSVGQSGDSLGIGGLTVPGVMHSNQGPSPSSLSIPSHMGSYIDGQGRSPIGPGSMSGPSPCALPQGTSPSLGNPLSHGGPQSISAFNPSTPHNVPSQSQEKKDEESERYDGIFLLDP
2) SKMMSKLDRSYTPDGGNTAGRKMGGKRVKPTTKIGTASKRLRLDSNWSEEIPSDKDDDFDARHMHGDSSGDEGTRHQNIFCKKRNKITSSEKAQMLNEPTGD
1
365
299
466










Molecular Recognition Features






MoRF SequenceStartStop




1) LYMQQ
2) MGVLSQGGAQQQQQGMYQQQQDDPSQQQGSQPMQMSYGI
48
1
52
39