<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29197

Description Uncharacterized protein
SequenceMNRFLSVLAKTIQKVEYKRARDYVMWTLLQNIKSLIPRSGDTFKESLQSISAIYSYLYDKGEGGEVMSSDCPLKMVRSLSAACLWIDLSGGTDSILPPSDFLARRIEFITKRNPNEVPENAMLAVIVNAYINDLRGQLQVLTQLLTDMRQQFHDPHVVLPSPAIVETAARLACMSENEKNVGSIFARVVEDAAKEGGFRSTNFLFIIIELMTFRCFNQLSSRSNVIIAAFQLLYHARPDNVSDPQTKKNMMNTLPLTKSHVLVDGTPPAPYSILNFPHDLAKALFVSYLRSCKLLGMEVPPELLKRINQCYYWSQSQTRYYNDKLEPNPRNFEDQESKAFAEYMAYVHSYLNSQPVPYQITAINSFVDYLAQEAKVDNMETFSAASCNALASMVITDEIIPIDRFFFTAAFTARSDESTLAVLALVRSIIRHPAYIDMTNQLTILPKMGSSDFIKKMNELKTRRRTSFPHSRVYDLQPSYYGHPLLKILSSVDSLLEKALQLNIPDEHFKELVDAFSPLYRFHPYPLTYSLSVMNLLYGHTDPRDSHLEIEKRRQILKMRAKAKLFVLSVVKFDHGQCPFSPHFISDKPLSTSEGDAMNVALTLTNNLVATFHIGHCPDDTLYADPRCATTFYTGDWRSSELSPQDLTIDQIIMETYEKAANRRRPTKVHTIIALSQAFWHHATVPILISFVSRFEEELERIVETEKDLFLALHILIPLLQRIADAKEKIHIDRCFRMVLLIYRLLKKIAVNEITKEDAICDLLYHFKYVFVGDSVKKDINEIIDSMSDSLKRKLKCCL
Length799
PositionTail
OrganismPristionchus pacificus (Parasitic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Diplogasteromorpha> Diplogasteroidea> Neodiplogasteridae> Pristionchus.
Aromaticity0.10
Grand average of hydropathy-0.132
Instability index51.36
Isoelectric point7.31
Molecular weight91384.51
Publications
PubMed=18806794

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29197
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.08|      48|     303|      92|     141|       1
---------------------------------------------------------------------------
   92-  141 (73.42/60.28)	TDSILPPSDFLaRRIEFITKRNPNEVPENAMLAVIVN..AYInDLRGQLQVL
  396-  445 (74.65/51.55)	TDEIIPIDRFF.FTAAFTARSDESTLAVLALVRSIIRhpAYI.DMTNQLTIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.54|      23|      25|     700|     724|       3
---------------------------------------------------------------------------
  700-  724 (28.07/25.32)	ERIvETEKDLFLALhILIPLLQRIA
  728-  750 (37.47/22.67)	EKI.HIDRCFRMVL.LIYRLLKKIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.66|      13|     284|     226|     238|       4
---------------------------------------------------------------------------
  226-  238 (24.08/13.28)	IIAAFQLLYHARP
  512-  524 (24.58/13.70)	LVDAFSPLYRFHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.36|      37|     197|     463|     500|       5
---------------------------------------------------------------------------
  463-  500 (60.22/48.20)	RRRTSFPHSrVYDLQPSYYGHPLLKILSSVDSLLEKAL
  663-  699 (65.14/47.06)	RRRPTKVHT.IIALSQAFWHHATVPILISFVSRFEEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.86|      21|      23|     325|     345|       6
---------------------------------------------------------------------------
  325-  345 (36.89/22.00)	LEPNPRNFEDQESKAFAEYMA
  351-  371 (35.96/21.28)	LNSQPVPYQITAINSFVDYLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29197 with Med23 domain of Kingdom Metazoa
Unable to open file!