<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29192

Description Uncharacterized protein
SequenceMRDKMSYRWKGNDVAFSRRVTPEVLKELLQRMRLHTLFDRQQIANWVADGFSNSIGLFLENKRSQLPTFEALDFVCTLYEQTNNIHGFFEFAELILSKRLPHIETAIRHCNSIIIPGLVSAQYTYVFCSYLVKHLQYFVHYERAPKVVDLLYLALEQSLKAVDYPRNGFGRAAAAAVYHLRDQLIESEVVESTDMLGGDKEFAHIFDQGTVASEGSSKYNRHFMMDNFQLLIAPASLRIYDYHDFKKRLPSFADPINRYSFVVNAFVAASKLQRDFDRLNDLASFCSHWTAHHPEMANDWMGAMKALCNAKSNYGFKHLLEQVEVSDCSIHYSLSTFASLLASKYAFSVPQMICEISNSTFANVLKKETAKASSRNSYKNDYESEPSACIALLFLTQVCCASDDPFIRESHQLSCHQRREIIADLDPNLYVSDHFRGRAPTKKLLEWGSTDLNILAIVHWCEMNDVVWKMIVRLGIMNDTLQSRVRDHNLQLEVPEGEEPSRRDYKKEYLPVILRQVLISITEQDWVKDRMWKVSAQDDMAAYGEEQRLKQNCLGQQLLRLGTRRRCERETLAQLAVCNGNSKRALIDKLFSALNIWNFRATLFDLRLMIKEMSPDGSSKHAQQGAIAADALMGEIAKCARELYVQAFRQNKIIMKKDERFSFSSLTNYLLLPTLIDDCPTPANMPSSFSASFKSKFLAECCTMLDVGPEPSEDKIKMSAWLIQDRSFLNVIMACMKGTDREDQAAKENLMSQILKQIQDLAKIKEDDVLTSQEERIDIFLRLQLVGYVFKQVLKKDTAEAWALVLFQLMLRGVITPTRNL
Length821
PositionKinase
OrganismPristionchus pacificus (Parasitic nematode)
KingdomMetazoa
Lineage
Aromaticity0.10
Grand average of hydropathy-0.238
Instability index47.91
Isoelectric point7.05
Molecular weight94258.32
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29192
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.56|      23|     146|      98|     121|       1
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   98-  121 (36.43/26.71)	KRLPHIETAIRHCnSIIIPGLVSA
  247-  269 (40.13/24.67)	KRLPSFADPINRY.SFVVNAFVAA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.95|      58|     240|      33|      97|       2
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   33-   97 (92.49/93.16)	RLHTLFDRQQ.....IANWVADG..FSNS.IGLF..LENKRSQlptfeaLDFVcTLYEQTN....NIH.GFFEFAELILS
  271-  343 (76.46/57.43)	KLQRDFDRLNdlasfCSHWTAHHpeMANDwMGAMkaLCNAKSN......YGFK.HLLEQVEvsdcSIHySLSTFASLLAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.18|      27|     238|     137|     165|       3
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  137-  165 (44.13/37.20)	YFVHYERAPKV.VDLLYLAleQSLKAVDYP
  378-  405 (46.05/32.05)	YKNDYESEPSAcIALLFLT..QVCCASDDP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.69|      37|     238|     489|     525|       4
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  489-  525 (61.46/45.29)	NLQLEVPEGEEPSRRDYKKEYLPVILRQV..LISITEQD
  730-  768 (56.23/40.79)	NVIMACMKGTDREDQAAKENLMSQILKQIqdLAKIKEDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.13|      13|      16|     544|     556|       5
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  544-  556 (23.31/18.19)	GEEQRLKQNCLGQ
  562-  574 (22.82/17.63)	GTRRRCERETLAQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.30|      12|     427|     361|     372|       9
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  361-  372 (20.93/12.73)	FANVLKKETAKA
  790-  801 (21.37/13.12)	FKQVLKKDTAEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29192 with Med12 domain of Kingdom Metazoa
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