<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29176

Description Uncharacterized protein
SequenceMTTVSATPQQMKDRLLQAVDSQSNICNMVVVLEVISCLEKYPITKEALEETRLGKLINDVRKKTKDEDLAKRAKKLLRNWQKLIEPGPAAAPGSTNGSSHPCQGEASPSDISVLGKGVLDVKIRNDVHNTYSPKAEKSSSRKRRMENRDSGVHLPEKLFKMSSYDDFASPPLPTNGIAGSPEDPAEQQPLRSPDRSRLDPLDNDKVSRIPVNAVKPRPSPGAAKLPSTSSLIKAAVMQQQAHLDEGGGAYYQAKSPRGLSTSPRSLKADVVAKRSAAYTPKETPVPSPSSRDSPLSSSQPVASPAQASNADRPPHSSYRSSTHWAGSFDLSSHCSPPDMYSTPEATGTSSASEGSASVSEDVDGAVGPGSEHKRRKYRSRDYSVNLDGQRVEEAAKPVRLKERRLTFDPVTGQIKPLVHKEPSPAEEGSTPSPGPYLHPGEFMQRTESPTHQPYHQTNWKELSRNEIIQSYLNLQSSLLTSSGVQAPGAHFFMSEYLKREGKESANSQVHALQTDSSPEDVPGVTREVSAEDLERIHTQHWPGVNGCYDSKGRWYDWTECISLDPHGDENKLNILPYVCLD
Length581
PositionUnknown
OrganismTetraodon nigroviridis (Spotted green pufferfish) (Chelonodon nigroviridis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Tetraodontiformes> Tetradontoidea> Tetraodontidae> Tetraodon.
Aromaticity0.05
Grand average of hydropathy-0.800
Instability index68.04
Isoelectric point7.00
Molecular weight63566.02
Publications
PubMed=15496914

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29176
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     574.19|     145|     335|      41|     198|       1
---------------------------------------------------------------------------
   41-  195 (223.12/123.92)	YPITkeaLEETRLGKLINDVRKKTKD...EDLAKRAKKLLRNwqkliEPGPAAAPGSTN...............GSS...HPCQGE.....ASPSDISVLGKGV.LDVKIRNDVHNTYSPKAEKSSSRKrrmeNRDSGVHLPEKLFKMSSY.....DDFASPPLPTNGIAGSPED.PAEQQPLRSPDR..
  196-  321 (153.26/69.71)	..........SRLDPLDNDKVSRIPV...NAVKPRPS...........PGAAKLPSTSSlikaavmqqqahldeGGG...AYYQAK......SPRGLSTSPRSLkADVVAKRS..AAYTPKETPVPSPS....SRDSP.........LSSS.....QPVASPAQASN...........ADRPPHSSYRSS
  382-  535 (197.81/90.96)	YSVN...LDGQRVEEAAKPVRLKERRltfDPVTGQIKPLVHK.....EPSP.AEEGSTP...............SPGpylHP..GEfmqrtESPTHQPYHQTNW.KELS.RNEIIQSY...LNLQSSLL.....TSSGVQAPGAHFFMSEYlkregKESANSQVHALQTDSSPEDvPGVTREVSAEDLER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29176 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ESANSQVHALQTDSSPEDVPGVTREVSAEDLER
2) NDVHNTYSPKAEKSSSRKRRMENRDSGVHLPEKLFK
3) QKLIEPGPAAAPGSTNGSSHPCQGEASPSDI
4) SSYDDFASPPLPTNGIAGSPEDPAEQQPLRSPDRSRLDPLDNDKVSRIPVNAVKPRPSPGAAKLPSTSSLIKAAVMQQQAHLDEGGGAYYQAKSPRGLSTSPRSLKADVVAKRSAAYTPKETPVPSPSSRDSPLSSSQPVASPAQASNADRPPHSSYRSSTHWAGSFDLSSHCSPPDMYSTPEATGTSSASEGSASVSEDVDGAVGPGSEHKRRKYRSRDYSVNLDGQRVEEAAKPVRLKERRLTFDPVTGQIKPLVHKEPSPAEEGSTPSPGPYLHPGEFMQRTESPTHQPYHQTNWK
503
125
81
162
535
160
111
460










Molecular Recognition Features






MoRF SequenceStartStop




1) AYYQA
2) KYRSRDYSVNL
249
376
253
386