<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29153

Description Uncharacterized protein
SequenceQGGVSHMQGMMPHQGLGQQMVHPTPGGGAQMQGQWRQPLGACLGQILMAGQRGAVPQSGMPQVSSVMEDEILMDLI
Length76
PositionUnknown
OrganismTetraodon nigroviridis (Spotted green pufferfish) (Chelonodon nigroviridis)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Tetraodontiformes> Tetradontoidea> Tetraodontidae> Tetraodon.
Aromaticity0.01
Grand average of hydropathy-0.184
Instability index61.70
Isoelectric point5.76
Molecular weight7995.21
Publications
PubMed=15496914

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29153
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.34|      15|      22|       2|      22|       1
---------------------------------------------------------------------------
    2-   17 (27.14/15.33)	GGVSHMQGMMpHQGLG
   26-   40 (32.20/ 6.85)	GGGAQMQGQW.RQPLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29153 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QGGVSHMQGMMPHQGLGQQMVHPTPGGGAQMQGQW
1
35










Molecular Recognition Features






MoRF SequenceStartStop




1) AQMQGQWRQPLGACLGQILMAGQRGAVPQS
2) QGGVSHMQGMMPHQGLGQQMVHPTPGG
3) SVMEDEILMDLI
29
1
65
58
27
76