<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29144

Description Uncharacterized protein
SequenceMKDRLLQAIDTQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTTNEDLAKRAKKLLRNWQKLIEPVGQNEPVSKGLPNVPGSANGGAHNCKQEAPPPTAAVGLKPIQELKSRNDIQNLNSPKVEKLGNRKRKGEQRDGHPGPPSKIPKATYEQIKNSSPPPTNGIGGSPENFPSPLGVTTVNAHTTSEKSRPENHENDKHSKIPVNAVKPHTSSPGLVKPPSTSSLLKTAVLQQHEKLALEASVGHCPPRSPRCVSYSPRNLKQEAAAKRPTTCAPKGAVSSPSVSSQVLDIAPIPSPLPLAQPSTPPILAKRPEAPLQLESDESQLSMGQVATESHQHNVVGTALQQLPLHGSRVSPHRDPTTTQHSLGFASDSSKVDSDDAASASDNKKKKKYRPRDYTVNLDGQLIEGSVKPVRLKERKLTFDPMTGQIKPLTHKDSVQVESPAPCEQFRTEPDRQETKANLPSPFEQTNWKEISKNEIIQTYLNRQSSLLSSSGVQTPGAHYFMSEYLKQEESTRREAKKTAVLVPNSSPTDLPGVSREVKGDDLDRIHDQHWPGVNGCFDTQGNWFDWTQCISLDPHGDDGRLNILPYVCLD
Length608
PositionUnknown
OrganismLatimeria chalumnae (Coelacanth)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Coelacanthiformes> Coelacanthidae> Latimeria.
Aromaticity0.04
Grand average of hydropathy-0.803
Instability index53.97
Isoelectric point9.04
Molecular weight66663.27
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29144
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     290.53|      61|      63|     106|     166|       1
---------------------------------------------------------------------------
   45-   91 (43.55/17.79)	....................KL..IND...VRKKTTNEDL...AKRA.KKLLRNWQKLIEPVGQNEPVSKglpnVP
   95-  158 (99.55/49.99)	NGGAHNCKqeaPPPTAAVGLKP..IQE...LKSRNDIQNL..NSPKV.EKLGNRKRKGEQRDGHPGPPSK....IP
  159-  215 (76.78/36.90)	KATYEQIKnssPPPTNGIGGSP...EN...FPSPLGVTTV..NAHTTsEK..SRPENHEN.DKH....SK....IP
  223-  287 (70.64/33.37)	TSSPGLVK....PPSTSSLLKTavLQQhekLALEASVGHCppRSPRC.VSYSPRNLK..QEAAAKRPTTC....AP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29144 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KERKLTFDPMTGQIKPLTHKDSVQVESPAPCEQFRTEPDRQETKANLPSPFEQ
2) PPRSPRCVSYSPRNLKQEAAAKRPTTCAPKGAVSSPSVSSQVLDIAPIPSPLPLAQPSTPPILAKRPEAPLQLESDESQLSMGQVATESHQHNVVGTALQQLPLHGSRVSPHRDPTTTQHSLGFASDSSKVDSDDAASASDNKKKKKYRPRDYTVNLDGQ
3) RREAKKTAVLVPNSSPTDLPGVSREVKGDDLDR
4) VGQNEPVSKGLPNVPGSANGGAHNCKQEAPPPTAAVGLKPIQELKSRNDIQNLNSPKVEKLGNRKRKGEQRDGHPGPPSKIPKATYEQIKNSSPPPTNGIGGSPENFPSPLGVTTVNAHTTSEKSRPENHENDKHSKIPVNAVKPHTSSPGLVKPPSTSSLLKTAVLQQHEKLALEASVGH
430
259
530
77
482
418
562
257










Molecular Recognition Features






MoRF SequenceStartStop




1) KKKKKYRPRDYT
2) YSPRNLK
401
268
412
274