<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29122

Description Uncharacterized protein
SequenceLLVISEELLFKYSCNLALLSGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQAAAASAATQQNTPKNGEATVNGDENGAHTINNHSEAMEIDGDVEIPPTKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGPTQLVLRHCIREGGQDVPSNKDVTSLDWNSDGRLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGSDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHNKEIYTIKWSPTGPGTSNPNSSVMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPEGKYLASGSFDKCVHIWNTQSGALVHSYRGTGGIFEVCWNARGDKVGASASDGSVSILIHS
Length509
PositionTail
OrganismLatimeria chalumnae (Coelacanth)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Coelacanthiformes> Coelacanthidae> Latimeria.
Aromaticity0.07
Grand average of hydropathy-0.268
Instability index37.34
Isoelectric point5.34
Molecular weight55236.98
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29122
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     356.49|      40|      40|     318|     357|       1
---------------------------------------------------------------------------
  155-  186 (28.94/ 9.31)	..............PTKatVLRGHESE...........VFICAWNPVS.........dlL.ASGSGD
  205-  242 (41.79/15.83)	LVLRHCirEGGQDVP....S....NKD...........VTSLDWNSDG.........rlL.ATGSYD
  243-  276 (38.49/14.16)	GFARI...WTEDGNLAS..TLGQHKGP...........IFALKWNRKG..........nY.......
  277-  324 (31.98/10.85)	....IL..SAGVDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNN..........ttF.ASCSTD
  325-  366 (65.68/27.95)	MCIHVC..RLGSDRPVK..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCSDD
  367-  417 (59.50/24.81)	MTLKIW..SMKQDTCVH..DLQAHNKE...........IYTIKWSPTGpgtsnpnssvmL.ASASFD
  429-  459 (39.40/14.62)	VCIH...............TLTKHQEP...........VYSVAFSPEG..........kYlASGSFD
  460-  499 (50.72/20.36)	KCVHIW..NTQSGALVH..SYRG.TGG...........IFEVCWNARG........dkvG.ASAS..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29122 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQAAAASAATQQNTPKNGEATVNGDENGAHTINNHSEAMEIDGDVEIPPTKA
107
158










Molecular Recognition Features






MoRF SequenceStartStop




1) VSILIHS
503
509