<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29121

Description Uncharacterized protein
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQAAAASAATQQNTPKNGEATVNGDENGAHTINNHSEAMEIDGDVEIPPTKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGPTQLVLRHCIREGGQDVPSNKDVTSLDWNSDGRLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGSDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHNKEIYTIKWSPTGPGTSNPNSSVMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPEGKYLASGSFDKCVHIWNTQSGALVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length509
PositionTail
OrganismLatimeria chalumnae (Coelacanth)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Coelacanthiformes> Coelacanthidae> Latimeria.
Aromaticity0.08
Grand average of hydropathy-0.331
Instability index36.92
Isoelectric point5.29
Molecular weight55440.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29121
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     355.18|      40|      40|     317|     356|       1
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  154-  191 (41.93/23.51)	......PTKatVLRGHESE...........VFICAWNPVS.........dlL.ASGS.GD...........STARIW
  212-  246 (40.80/22.66)	EGGQDVP....S....NKD...........VTSLDWNSDG.........rlL.ATGS.YD...........GFARI.
  247-  277 (40.53/22.46)	WTEDGNLAS..TLGQHKGP...........IFALKWNRKG..........nY.......................IL
  278-  329 (46.99/27.28)	SAGVDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNN..........ttF.ASCS.TD...........MCIHVC
  330-  371 (63.69/39.75)	RLGSDRPVK..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DD...........MTLKIW
  372-  431 (43.23/24.48)	SMKQDTCVH..DLQAHNKE...........IYTIKWSPTGpgtsnpnssvmL.ASAS.FDstvrlwdvergVCIH..
  432-  464 (37.40/20.12)	...........TLTKHQEP...........VYSVAFSPEG..........kYlASGS.FD...........KCVHIW
  465-  504 (40.63/22.53)	NTQSGALVH..SYRG.TGG...........IFEVCWNARG........dkvG.ASASdGS...........VCV...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29121 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LAQQQAAAASAATQQNTPKNGEATVNGDENGAHTINNHSEAMEIDGDVEIPPTKA
103
157










Molecular Recognition Features






MoRF SequenceStartStop




NANANA