<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29091

Description Uncharacterized protein
SequenceQNSPGLKHLIITAWKERWTEKKWSIHVKKLITSSSDMFHLADVLVSQSFIGSSPNLLMLGYISYALDCGMLSYASVISAISKHEELSKIESTKGVYNLLQQCLQFVCNNKVTEDAMELCFSLRIVLQWLLRNIEQYLKGVRDIYGSAAEELIKLNCQTLELIATQPRTAGLLTIARFAESGIWNHIETDLAVIKNTSGQHPMYGEISTSCHHVSQLSKCSIAQKPVYKLQTSGAVYHSILTLILLEVEERKLTNVEGIVQQLMLLSNVHGLTTRKLIFRLIQACFMLYLDAVDTELEQEWCAMVFLRLPKIILQTKRTNYRHKISNNKIAEFNSDLEDALKMMLKLDSLLDTIDQLREGMNCIQLFTEQLMKKDRINESFHQELNKLRSEMMEGMPSNNGQERCLNPVILLKADSTIEQLVKLFSSADFSAEPENLLSTFAGMRTMSSFNALTAAAATTGQLADFASVLINCNNVMKSSSAETMKSAQIRAVLFDITFLMVCYMIKLYDKEAIIVSFNAQSKDEIPILLHWANTWWLDQINQISSVKYESDPSRVENLIQVLRNSQEFKLSMTKWNDICINLPQAVIELLIARQKGAIQLSEVIRACCFIRDGCPLAVTMSVIAAVARSARLVVAHKDHIKVLSTLVEKSSVQSQSNMMYNERYIFFQSLCETIVSDLLPSLKQDGSTLDKNKLHSEVLQQTLSTTRKIGWINRDGIAKFSECFNMLGVFGFMRQAMKHILKETRLNEITTTVDIVFGIMRLDIISTTMYLLKHGIPDFLKQDSQPLASPLGRAIAKMAVAGLDLALNESALQQKSQLPPSKRQNPFSQNVALNRQSGQHKVRRLFSCSTEHDLSIPGLTFDDPLVHILSEFIDVMWCSLEANTHGPQSEFVLEFVKLSLQASPLLSRTVKRLIPIPMIRELRYSLVNHSRELLFAACDLGNPEIRKLAAHAVCIS
Length956
PositionTail
OrganismCiona savignyi (Pacific transparent sea squirt)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Tunicata> Ascidiacea> Phlebobranchia> Cionidae> Ciona.
Aromaticity0.07
Grand average of hydropathy0.012
Instability index46.54
Isoelectric point7.95
Molecular weight107905.38
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29091
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     452.71|     150|     169|     534|     695|       1
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  534-  695 (226.77/173.47)	TWWLDQINQISSVKYesdpSRVENLIQV...LRNSQEFKLSMTKWNDI..CINLPQAVIELLIARQKGAIqLSEVIRAccFIR.DGCPLAVTMSviAAVarsARLVVAHKDHIKVLSTLVEKSSV.QSQSNMMYNERYIFFQSLCETIVSDLLP.SLKQD....GSTLDKNKLH
  706-  867 (225.94/140.75)	TRKIGWINRDGIAKF....SECFNMLGVfgfMRQAMKHILKETRLNEIttTVDIVFGIMRLDIISTTMYL.LKHGIPD..FLKqDSQPLASPLG..RAI...AKMAVAGLDLALNESALQQKSQLpPSKRQNPFSQNVALNRQSGQHKVRRLFScSTEHDlsipGLTFDDPLVH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.69|      27|     176|      93|     119|       3
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   93-  119 (48.93/30.61)	KGVYNLLQQCLQFVCNNKVTEDAMELC
  275-  301 (48.77/30.49)	KLIFRLIQACFMLYLDAVDTELEQEWC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.06|      22|      23|     450|     471|       5
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  450-  471 (33.77/23.67)	NALTAAAATTGQLADFASVLIN
  474-  495 (35.30/25.07)	NVMKSSSAETMKSAQIRAVLFD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29091 with Med24 domain of Kingdom Metazoa
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