<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29084

Description Uncharacterized protein
SequenceQALIKFIHKQQHSRRITFMFDFMETCIKDGFLPPRLSCVNIGMSSCIPRRIQWCRTYDVIRKFVHLVDYKGCRNILHNMILKMSQIPQSAWIDAKEQVTAICGTIEHLLDPESCLLPGYLAVNEIRQNMQDEQLEAPWPLLVKLSEFIDRFRATATMVSTTARWMLLPVVDHAFYQLPSTWKLEPETLRFPLKRQLPYSPEMYQRQTRLLNYILEQLYSRDMVLQVLGLQKHQKQRLCIIWFKKLIDLVFATIRKSSEIKEKTEGQHLMWQHLSSQVIYFLLYQQASFPHIVETVYLKSEALREECISHGRDYLMWVLLQFISGSVQKNPLSDFVPVIKLIHLLYPEKQPLKVPELTSQQSTIAFSAVCNLVLLNRKSQGKPAADATHALHWQHEFLMKLLQSKNLKSKDSHIALIGNACSTSTELFNMAVGTLVEGVFGDASSTTPMPGTNCVAFNKTTPHSMELLDTLTFHTKMSMLHMISQKIQKFAQANASVALAPALVETYSRLLIYSEIETLGIKILVSQVVPKVYDSRAWGILNTLLELVSYRMHYIQPSYRIQLLTHLHKLCNSPHANHGQLHFRLESTALKLIMGFDNFGIKPQLVRMFNEQKQSIVSQKSEELNRVLVLTLARSIHITGWCLYAESISGSWCIDILKALMAATPHKWPQQTLACFPQSIQDYFNHYFFASFLLRCFNNFETVNKKQLKANVEQEYVKWGPLLASDADILNHFSQPSSHSYYLCLIWKVLFEDKKPSNTAYKVLERMGSSQLSQHVRTFSDFLVYEFSVLEGGSDVKTCTNVLQDMVWKYNIVFLDRLILCLALRSSEAKDVQVRLWVYQICRACTRYFRNHNHKFTVAFFIIQYLLIKPDDFLNRVRSFVHDIDTVDHWMQPDWHSKHMSYHQKYPEHYYFEGLGNPLSRPTYSTYFSNITLRFLPVLDIVIHRCLELPPSSKSLETLLEHLGLLYKFHDQPVTYLFNTLHYYESKLRGRHLLKKKLVSTIIGAITKSKPPGWILSETMMNYLLEPTEHEWTPDSSYYCALVQRLADNILCYIILTLVWKGTLCVAPRDWRFNEFPNASAHALHVTCVEALALPIPGEQVGPALMDVVLTTKPGIEREYMFSRMNAVALALTALPEIYWKPLHQNILKMLCSATLTSDIEPGSSYPYHILSYSNQQLSYTDMPCTRLLALAHVVWHHMSIGQLSLVSQYVRAALICILSLHSMFLKEEAKPLIKTELQLLYIFHLIGPYFPRFQLERTRCMMDVTQVLYDILLRVSKHAPEIHFADEIADFLYHVKYVHIGTAINDRVEE
Length1310
PositionTail
OrganismCiona savignyi (Pacific transparent sea squirt)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Tunicata> Ascidiacea> Phlebobranchia> Cionidae> Ciona.
Aromaticity0.11
Grand average of hydropathy-0.036
Instability index49.48
Isoelectric point8.65
Molecular weight151748.14
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29084
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.11|      40|      43|     798|     840|       1
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  798-  840 (60.98/57.45)	CTNVLQDMVWKYNIVFLdrLILCLALRSSEAKDvQVRLWVYQI
  844-  883 (72.13/54.44)	CTRYFRNHNHKFTVAFF..IIQYLLIKPDDFLN.RVRSFVHDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.34|      59|     723|     160|     408|       2
---------------------------------------------------------------------------
  270-  352 (69.20/266.93)	WQHLSsqviyfllYQQaSFPhivETVYLK..SEALREECIShgrDYLMWVLLQFIsgsvqknPLSDFVpVIKLIHlLYPEKQPLK
  896-  956 (104.14/12.04)	SKHMS........YHQ.KYP...EHYYFEglGNPLSRPTYS...TYFSNITLRFL.......PVLDIV.IHRCLE.LPPSSKSLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.19|      46|     976|     150|     268|       4
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  197-  250 (67.58/135.12)	PYSPEMYQRQTRLLNYILEQLYsrDMVLQVlglQKHQKQrlcIIWFKKLIDLVF
 1248- 1293 (83.61/24.60)	PYFPRFQLERTRCMMDVTQVLY..DILLRV...SKHAPE...IHFADEIADFLY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29084 with Med23 domain of Kingdom Metazoa
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