<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29077

Description Uncharacterized protein
SequenceMSLLGFYQNRWLIRSRLGPPDVYPQDSKQKEDELTLVNVKQGFINQPPLPEEHSSAHLYTIDVNKIHQSFNQILTQKQMTTTFIDAGAGKRLKPQVSKEHFWLVPVINPKFRGHLQSWFKDLIGVKSLMNLCRRFPVFSKKDDLFRTLAEYEVPMVRATWVIKMTSAYHLTQTDAKIKKRAGNDPNLEWTQAICKFLREQLAKLNDGNNSPNTSSTYRVSLITCIPRLVQFILTQHNPSVIFKLFPQGLFDRHEFLSWLVEEFECVPLYDEVALSYFVPILQGFIEEVAMNQLLARRMSFAAARHLNWLFLEGSNSRSQSPALQSGSNTPGTPQLITRPTPPQLKQQCPDYLLSIAHTLGCAIQCTVISCPGALVWYQPVDAKSCGSPLDLLPCASSDLPLPDVPKQDLIKHRLLLQQQEAEIIRRSRASEMKWSTDKCQESTAGHTINRVLGALEALDKQHFERRTTDSWCDPLDSLYHKIFDPGQEKDCDIQLTKSSEDAVVGLLCEWAISPKRLGVHRAAVVAKLLDLRQQAELPEPPMENDTSLNTSESMPPNLASATPYFQNLLFTFLDVQAPELSKENRDDFEEIQSFRNLVLLFSELIEHDVFSHDIYMNTLISRGEISSGDYYKIHIHSLIYPLYLPTYQVPTNLPLESTYVPNTPTNVPLVPTNPIHLYKPNTSFNPPLMHTTGKSPPNPDGNNIAGGVWGHGQPRHVQYLMHFPIPFQDDGITQEWNQRLMVLYGAGRVKTDVKRAVRKVTRHLTKLMQCRRSIDDGFDSTSTAGGVTPGRKAKKSNRSSHLEVLSRYRLLSYFDQHMATSTAAKALLTAIKNYIAGRSSQLPRLEVVQLLFDLMEDALNVGGLVRTAVAVAARLADLAAEIERRKKDFAAQMDYAWYATELSLAVVSVLRHYISYLTLNADITIDAFEGLLNAVKQSCIPKPQRIALHLIGDILVFLYDLHTSFGYIRSQSAESFSGYVSTVRQALCSTKKPATSNCRYDPNFLREFISNPSMESPLTVAQRFSDCLQDVTARYSFVCSAVITVCNGHQDFEKVNALAILCSEMNARCNELSSEWLGVLKALCFSSCAVNFNDVLLVVEASDAQIRDPLSIFTAVLIARGCLSLEDVIQHVAIPSLLAACKNRTAPGLPNPDTSARLTCHLLLQLFKSPSSNNSSFRLPFSSDRHLLAAAQQNIAVGAVLAVLKGVLKLGSINYALKHLALVSYNHYRLVTPITGDAGLSATRNHGAMEGASLSEFAKHAVRVICSQQWVREKCLKDPVMDLLMDQVLTREQRQNLIQLICYPQEDLQRLSGLSNDPRRYVVNVLSGMTRWTFRQCLLELQVMLRQSPQEKSLPEHIAKATIEVFQQQQQQNAESTKERKSSLTGPELDRCNVWLVAPLVSKLPSQVQGKVLQEASAILEAPQNLSSTSTRSGAGSRSDKDQRQGGTSLLNLQPFLTLILTCLKGQDEQRDSLLESLQSQIVMLHTEWQESHRGPCKDISSQNCVHDALELRLSLVGGMFDTVMSNSQWTSDVVIMLMTLILSGMVDVQTNIELFDVVYDMIAVLLHHTLGGDAINRGEGSKREYINIVKKMKKEIADRQSESIRRLRQLLPITRAEVYVVCCEPAGPHMDVKGNKIPVPVDGNQGLQVASKQKLNMWDVIEGLKHSAPLCLAWFGAKTTERKPMFYEEQHSLLLHHQHSQKRDLKDFLTPPQLPPEEEEDIKPPELKP
Length1730
PositionKinase
OrganismCiona savignyi (Pacific transparent sea squirt)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Tunicata> Ascidiacea> Phlebobranchia> Cionidae> Ciona.
Aromaticity0.07
Grand average of hydropathy-0.228
Instability index50.98
Isoelectric point7.53
Molecular weight194352.88
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29077
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.89|       7|     452|     304|     333|       1
---------------------------------------------------------------------------
  304-  310 (15.16/ 7.81)	RHLNWLF
  715-  721 (13.73/10.25)	RHVQYLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.92|      16|      18|     649|     666|       7
---------------------------------------------------------------------------
  649-  666 (24.38/22.52)	VPTNlPLEsTYVPNTPTN
  670-  685 (33.54/20.20)	VPTN.PIH.LYKPNTSFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.53|      41|     716|     814|     888|      11
---------------------------------------------------------------------------
  814-  860 (51.85/98.21)	FDQHMATSTAAKALLTAIKNYIagrsSQLpRLEvVQLLFDLMEDALN
  893-  933 (68.68/37.18)	MDYAWYATELSLAVVSVLRHYI....SYL.TLN.ADITIDAFEGLLN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29077 with Med12 domain of Kingdom Metazoa
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