<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29072

Description Uncharacterized protein
SequenceMDQIRGTNDSWKTAAVRNAGKQQLMDAIRKAGKNYNFNFLTIENNICVKAKSLEEYRTYVERIVQKMRSDSQQQQQQQQRGMMQSNQDQHIQQQLQQQNMQQQNIQQQNIQQQSLQQQNMQQQNIQQPSMQQQNLQQQNMQQQSIQQTSMQQQNMQQQNLQQQNIQQHSLQQQNLQQQNIQQQSIQQQNIPQQNIQQHNLQQQSLQQQNMQQPNMQSQSIVQDQESIYRAPQQGMYQTTPIQRTPQHNVMQ
Length251
PositionTail
OrganismCiona savignyi (Pacific transparent sea squirt)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Tunicata> Ascidiacea> Phlebobranchia> Cionidae> Ciona.
Aromaticity0.03
Grand average of hydropathy-1.508
Instability index101.14
Isoelectric point9.56
Molecular weight29940.70
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-KW

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29072
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.93|      17|      17|      91|     107|       1
---------------------------------------------------------------------------
   91-  107 (40.67/ 8.11)	IQQQ.LQQQNMQQQNIQQ
  110-  127 (36.27/ 6.33)	IQQQsLQQQNMQQQNIQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.42|      32|      32|     131|     162|       2
---------------------------------------------------------------------------
  131-  162 (65.49/14.78)	QQQNLQQQNMQQQSIQQTSMQQQNMQQQNLQQ
  166-  197 (61.93/13.41)	QQHSLQQQNLQQQNIQQQSIQQQNIPQQNIQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.82|      18|      23|       1|      18|       4
---------------------------------------------------------------------------
    1-   18 (33.43/24.15)	MDQIR..GTNDSWKTAAVRN
   25-   44 (28.39/19.59)	MDAIRkaGKNYNFNFLTIEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29072 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQNMQQQNIQQPSMQQQNLQQQNMQQQSIQQTSMQQQNMQQQNLQQQNIQQHS
2) QQQNIPQQNIQQHNLQQQSLQQQNMQQPNMQSQSIVQDQESIYRAPQQGMYQTTPIQRTPQHNVMQ
3) VQKMRSDSQQQQQQQQRGMMQSNQDQHIQQQLQQQ
117
186
64
169
251
98










Molecular Recognition Features






MoRF SequenceStartStop




1) GMYQT
234
238