<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29052

Description Uncharacterized protein
SequenceMASSKDGDKDPSRKLKVPKRPEFSNGGSLEDCASNVFSLLELPGIKWKCFCTKPNAPRGVPLTTDLVLKAYSKCVLDKILCTWRRKQLTASGNNELLPLPHFSNDTPKELWVFWYDDEPEVLKQHTEELECDEEMSSAAQMNIVSYEVRTILFKALHVVLERDLTRDGFVRFGRWFTIPFDAREGYLHYLYPAHNPAIRLNFFVHGAHTVCASVQAQRQPTLLVLARRHLEYKGPKSFAVIVGPWSMRGVLVQDQIPLLENPEMQETSEKEWNHWKEYLQMEEKEPEKVSEEKTKSPEPESSQPQAPRALLNDSSDEEVSNTTEQVESGDDTIPEDIPQRLRWMYEPDISYKPDKPEKPREETVEEKEKREQAREKRRKRRKDREERRKEIERQRADVTNPEEYDSDVVTDPETEDPDAPVNNEVPKMVLLEIDGVRMLYPSKYVCVTLEADRQVLESMGQRTNTVPDELQVQGRRPRNKFVVNVANPMLSTLAVYQYIQKERLPDKLMIDRTKPKFGQAELPAIKKNHLSWKMKRRQQTCCHRTELGVTDYSKNYWPPYYSRRCRWSFYNNRKGSGWQFSRVLQCPICMFYATKSFKAKTRRLNETKAVSEKVTNRVRRKRDFHAFWKKKAKEPPLPPKVKGLARFLYRVNYIQKKKARLRLKLKDPKAKLRYEKLKLKRKRFRVSSLLSKNRDLHKQFLERRDNERPNDAVRAESEDETYQMDALCQKDWANFDGDYPKDIPQVGEMDTEKNANSTATRSTSRESEESSKNFAT
Length776
PositionMiddle
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.09
Grand average of hydropathy-0.959
Instability index52.74
Isoelectric point9.16
Molecular weight91041.51
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29052
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     274.57|      85|     301|     330|     416|       1
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  252-  328 (102.22/44.47)	...VQDQIP...........LLENPEMQETSEKEWN.................HWKEYLQMEEKEPE.........KVSEEKTKSPEPESSQPQAPrallnDSSDEEVSnTTEQVES
  330-  416 (140.89/68.23)	DDTIPEDIPQRL.......RWMYEPDISYKPDKPEK.................PREETVEEKEKREQAREKRRKrrKDREERRKEIERQRADVTNP.....EEYDSDVV.TDPETED
  418-  480 (31.45/ 8.45)	DAPVNNEVPKMVlleidgvRMLY..........PSKyvcvtleadrqvlesmgQRTNTVPD.ELQVQGRRPRNK...........................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.91|      41|      70|     595|     636|       3
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  595-  636 (66.46/44.74)	KSfKAKTR.RLNETKAVSEKVTNRVRRKR...........DFH.AFWKKKAKEPP
  656-  709 (52.44/29.89)	KK.KARLRlKLKDPKAKLRYEKLKLKRKRfrvssllsknrDLHkQFLERRDNERP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.25|      12|     478|      37|      48|       5
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   37-   48 (24.45/14.82)	FSLLELPGIK.....WK
  517-  533 (18.80/ 9.80)	FGQAELPAIKknhlsWK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29052 with Med13 domain of Kingdom Metazoa
Unable to open file!