<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29049

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINIKKNFPKGATWDYPNLAEALMEQAMIGLSPNPLILSYLKYAVSSQMVSYSSVLTAISKFDDFSRELCVKSLLEIMDMFCHRLSCHGKAEECIGLCRALLVVVDWLLQGCDWYCEKLRELGPSVSTETSLRACLDRLHTLMNSTKNRALVHIARLEDQSAWNNVEQSVMKVTEGLGSIPNQALATKLEECLSLVKSIPMMLSVQCDQPVHASFPSVHAFVMLEGTMNLTGETQPLVEQLMMIKRMQKIPTSLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYHGDKGEDFMEDVNVAFQHLLKLTPLLDKADQRCNCDCLGMLLQECHKLGLLSEVNTSCLTEKRAEDREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKTKSASVRALLFDISFLMLCHMVQTYGSEVILSDPSPSGETPFFETWLQTGMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSAEMKLVQVKWHEICLSIPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVSHVRMLGRDEREKPQTMIRQLVTPLYGEHTLQFYNERVIIMSSIMECMCADIFQQTGATLRPPMEGQESIPYRNLLPAKDPIHMSLSKQFQTVLSKGWVDSQALHLFDSLLNMGGVFWFTNNLIKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGTIVPNLLTDSAHWHSLTDPPGKALIVRVVCAHNLSFLKGEYGGDCCIVTTLLQDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPADRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSIVGSKMAGPHTQFVQSFMEECVECLEQGSHGSILQFMPFTMVSELVKHPALAKPRVVLAITDLTLPLGRRVAAKAISAL
Length948
PositionTail
OrganismTakifugu rubripes (Japanese pufferfish) (Fugu rubripes)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Tetraodontiformes> Tetradontoidea> Tetraodontidae> Takifugu.
Aromaticity0.07
Grand average of hydropathy0.019
Instability index44.18
Isoelectric point5.91
Molecular weight106039.39
Publications
PubMed=21551351

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29049
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.73|      10|      17|     877|     887|       3
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  877-  887 (16.93/15.57)	GPHTQFVQsFM
  897-  906 (19.80/12.42)	GSHGSILQ.FM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.01|      13|      15|     472|     484|       5
---------------------------------------------------------------------------
  472-  484 (22.95/11.84)	EVILSDPSP.SGET
  488-  501 (21.06/10.32)	ETWLQTGMPeEGKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.02|      10|      17|     239|     248|       7
---------------------------------------------------------------------------
  239-  248 (17.68/11.23)	PSVHAFVMLE
  259-  268 (17.34/10.88)	PLVEQLMMIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.90|      48|     355|     160|     233|       8
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  160-  208 (79.56/78.18)	DRLHTLMNSTKNRALVHI...........ARLEDQSAWNN....VEqSVMKVTEGL.GSIPNQAL
  517-  580 (62.34/27.29)	ESLVTLLNNSAEMKLVQVkwheiclsipaAILEVLNAWENgvlsVE.AVQKITDNIkGKVCSMAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.30|      17|      19|     820|     836|       9
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  820-  836 (28.05/19.99)	LSSNEDEPVALSSPADR
  842-  858 (29.25/21.19)	LSASQLHTVNMRDPLNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.51|      13|      19|     761|     773|      10
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  761-  773 (23.65/12.48)	HSLT....DPPGKALIV
  779-  795 (20.87/10.23)	HNLSflkgEYGGDCCIV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29049 with Med24 domain of Kingdom Metazoa
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