<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29024

Description Transducin (beta)-like 1 X-linked receptor 1b
SequenceMSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQQQQQQQQATGSSSSSSGSSTASQGSAKNGDGAANGEENGSHALANHHSDMMEVDRDVEIPQSKAMVLRGHESEVFICAWNPVNDLLASGSGDSTARIWNLSENSTGGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPVKTFQGHTNEVNAIKWDPTGSLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTNNPSASLMLASASFDSTVRLWDVERGVCIHTLTCHQEPVYSVAFSPDGRHLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNATGDKVGASASDGSVCVLDLRK
Length523
PositionTail
OrganismTakifugu rubripes (Japanese pufferfish) (Fugu rubripes)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Tetraodontiformes> Tetradontoidea> Tetraodontidae> Takifugu.
Aromaticity0.07
Grand average of hydropathy-0.353
Instability index39.28
Isoelectric point5.38
Molecular weight56606.15
Publications
PubMed=21551351

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29024
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     375.03|      40|      40|     331|     370|       1
---------------------------------------------------------------------------
  164-  225 (36.23/15.15)	VEIPQSKAM.VLRGHESEVFI.............CAWNPVN.........dlLASGSGDstariwnlsenstggstqlvlrHCIR.
  226-  260 (39.93/17.35)	.EGGQDVP..S....NKDVTS.............LDWNSEG.........tlLATGSYD......................GFARI
  262-  290 (35.64/14.79)	TKDGN..LASTLGQHKGPIFA.............LKWNKKG..........nF................................I
  291-  342 (45.06/20.42)	LSAGVDKTTIIWDAHTGE..AkqqfpfhsapaldVDWQSNN..........tFASCSTD......................MCIHV
  343-  384 (62.73/30.97)	CKLGQDRPVKTFQGHTNEVNA.............IKWDPTG.........slLASCSDD......................MTLKI
  385-  435 (57.13/27.62)	WSMKQDTCVHDLQAHSKEIYT.............IKWSPTGpgtnnpsaslmLASASFD......................STVRL
  436-  477 (59.53/29.06)	WDVERGVCIHTLTCHQEPVYS.............VAFSPDG.........rhLASGSFD......................KCVHI
  478-  518 (38.76/16.66)	WNTQTGALVHSYRG.TGGIFE.............VCWNATG.........dkVGASASD....................gsVCV..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29024 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RQQAYRDKLAQQQQQQQQQQATGSSSSSSGSSTASQGSAKNGDGAANGEENGSHALANHHSDMMEVDRDVEIPQSKA
95
171










Molecular Recognition Features






MoRF SequenceStartStop




1) FLVYRYL
10
16