<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29014

Description "Transcription elongation factor A (SII), 2"
SequenceMGATQKSRGCPNSRHSNSQHAPAGVCQQQTSASSSWRRGAASWRHPWTLSASDTTEKLLEKMVRSQEVERIAKKLDKMVQKKKTDGALDLLRELRNMKMSLEMLQSTRVGMSVNAVRKQSSDEEVQNIAKSLIKSWKKLLDGSEEKKKDGSPVRSSSTSKDSGSSRKSTKASDESSGAPTGPGLPPPVAAFPPALVTKDNVRNKCRELLVAALQTGGDHLTMGVDCQHLAAQIEEEIYQEFKSTETKYKSRLRSRISNLKDQKNPELRRNVLCGNISPQRIASMSAEEMASAELKQIREALTKESIREHQLSKVGGTETDMFICNNCHGKSCSYTQVCVAVSSVCRLFPVCVCVTCVSCVCPLCVPCVSCMCVFCVQCV
Length379
PositionUnknown
OrganismTakifugu rubripes (Japanese pufferfish) (Fugu rubripes)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Tetraodontiformes> Tetradontoidea> Tetraodontidae> Takifugu.
Aromaticity0.03
Grand average of hydropathy-0.471
Instability index59.54
Isoelectric point9.12
Molecular weight41611.40
Publications
PubMed=21551351

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29014
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      49.60|      11|      15|     338|     349|       1
---------------------------------------------------------------------------
  338-  347 ( 9.59/ 6.30)	........CVaVSSVCRL
  348-  363 (18.71/ 9.16)	FPvcvcvtCV..SCVCPL
  365-  373 (21.29/11.44)	VP......C..VSCMC.V
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.10|      13|      15|      57|      69|       3
---------------------------------------------------------------------------
   57-   69 (21.01/13.70)	KLLEKMVRSQEVE
   73-   85 (21.09/13.78)	KKLDKMVQKKKTD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29014 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MGATQKSRGCPNSRHSNSQHAPAGVCQQQTSASSSWRRG
2) SEEKKKDGSPVRSSSTSKDSGSSRKSTKASDESSGAPTGPGLPPPVAAFPPALV
1
143
39
196










Molecular Recognition Features






MoRF SequenceStartStop




1) SLIKSWKKLL
131
140