<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29003

Description Transducin beta like 1 Y-linked
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDSCPIESLSLIDAVIPDVVQMRQQAFGEKLTQQQASAAATMTPAATVNGEENGAHEISECPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFTRIWTKNGNLASTLCQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFTFHSAPALDVDWQNNMTFASCSTDMCIHVCRLSCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYQGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length477
PositionTail
OrganismPan troglodytes (Chimpanzee)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Hominidae> Pan.
Aromaticity0.08
Grand average of hydropathy-0.204
Instability index40.33
Isoelectric point5.03
Molecular weight51657.17
Publications
PubMed=16136131

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-KW

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29003
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     430.13|      59|      68|     341|     399|       1
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  114-  148 (28.42/ 9.94)	.......................MTPAATVNGEE...NGAHEISECPME....IDG.D..VEIP...PNKA.
  161-  216 (56.46/25.97)	CAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQlvlRH.....CIREGghdvPSNkD..VTS.........
  217-  264 (69.98/33.70)	LDWNSDGTLLATGSYDGFTRIWT.KNGNLASTLC...QHKGPIFALKWN....KKG................
  267-  297 (27.67/ 9.52)	.........ILSAGVDKTTIIW...........D...AH...............TG.E..AKQQftfHSAPA
  300-  343 (64.58/30.61)	VDWQ.NNMTFASCSTDMCIHVCRLSCDHPVKTFQ...GHTNEVNAIKW........................
  344-  399 (92.00/46.28)	...DPSGMLLASCSDDMTLKIWSMKQDACVHDLQ...AHSKEIYTIKWS....PTG.P..ATSN...PNSSI
  411-  470 (91.02/45.73)	VAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYQ...GTG.GIFEVCWN....ARG.DkvGASA...SDGSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29003 with Med16 domain of Kingdom Metazoa
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