<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28991

Description Uncharacterized protein
SequenceMTAAPASPQQIRDRLLQAIDPQSNLMEKSLSRKYETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVRWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDLPGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length585
PositionUnknown
OrganismPan troglodytes (Chimpanzee)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Hominidae> Pan.
Aromaticity0.04
Grand average of hydropathy-0.916
Instability index63.95
Isoelectric point9.51
Molecular weight63906.85
Publications
PubMed=16136131

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28991
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     434.08|      96|      98|      82|     179|       1
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   82-  174 (151.48/65.29)	......L.....A...............GATGS....ANGGAHNCRPEVGAAG.PPRSiHdLKSRNDLQR...LPGQRLDRLGSRKRRGDQR.....DLGHPGPP.P...KVSKASHDPLVPNSSPLPTNGISGSP
  175-  266 (124.39/47.75)	ESFASsLdgsghA...............GPEGSrlerDENDKHSGKIPVNAVR.P....H..TSSPGLGK...PPGPCLQPKASVLQQLDRV.....D.ETPGPPhP...K......GP..PRCSFSPRN..SRHE
  267-  310 (68.33/22.88)	GSFAR.................................................................qqsLYAP..........KG........SVPSPSPR.P...QALDATQ...VP..SPLPLAQPSTPP
  321-  422 (89.88/32.44)	ES...........pvrwleqpeshqrlaGPGCK....A..GLSPAEPLLSRAGfSPDS...SKADSDAAS...SGGSD.SKKKKRYRPRDYTvnldgQVAEAGVK.PvrlKERKLTFDPMTRQIKPL.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.76|      20|      20|     429|     448|       2
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  429-  448 (34.18/21.51)	RADSPVHMEQQSRTELDKQE
  450-  469 (34.58/21.85)	KASLQSPFEQTNWKELSRNE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.01|      13|      22|     474|     488|       3
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  474-  488 (17.33/17.08)	YLSRQSSllSSSGAQ
  499-  511 (22.68/14.58)	YLKQEES..TRQGAR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28991 with Med26 domain of Kingdom Metazoa
Unable to open file!