<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28941

Description "Transcription elongation factor A (SII), 2"
SequenceMAKNQEVERIAKKLDKMVQKENTEGALDLLKELQNIKMSLETLQSTRVGMSVNAVRKQSSDEEVQTLAKSLIKSWKRLLDGSEGKSEKKEKKKEGSPLRSSSTSSDSGSSGKSAKSGDTPTTPNTPSTPTLPPLITSFPPAPVTSDSVRNKCRELLVAALQTDDDYKTIGVDCDHLAAQIEHQIFQEFKSTDMKYKARLRSRISNLKDQKNPDLRRNVLCGNISAQRIACMTAEEMASAELKQIREALTKESIREHQLSKVGGTETDMFICSKCHGKNCTYTQVQTRSADEPMTTFVLCNGCGNRWKFC
Length309
PositionUnknown
OrganismOryzias latipes (Japanese rice fish) (Japanese killifish)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae> Oryzias.
Aromaticity0.04
Grand average of hydropathy-0.716
Instability index54.08
Isoelectric point8.99
Molecular weight34313.69
Publications
PubMed=17554307

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28941
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.96|      22|     228|      55|      76|       1
---------------------------------------------------------------------------
   55-   76 (36.77/19.35)	VRKQSSDEEVQT..LAKSLIKSWK
  284-  307 (38.19/20.31)	VQTRSADEPMTTfvLCNGCGNRWK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28941 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLDGSEGKSEKKEKKKEGSPLRSSSTSSDSGSSGKSAKSGDTPTTPNTPSTPTLPPLITSFPPAPV
2) MAKNQEVERIAKKLDKMVQKENTEGALDLLKELQNI
78
1
143
36










Molecular Recognition Features






MoRF SequenceStartStop




1) IAKKL
2) LAKSLIKSWKRLLD
10
67
14
80