<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28925

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWTDYQWAVNIKKNFPKGATWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYASVLTAISKFDDFSRDLCVKSLLDIIDMFCCRLSCHGKAEECIGLCRALLGVVVWLLQACAWYCENLRELGPVPSIEAILRTCQERLHTLMKSTKNRALVHIARLEDQGSWNNVEQAVIKVTEGLGNVPNQTLRTSLEESLFLVKSIPSMLSVQCELPVRASFPSVHAFIMLEATMNLIGEIQPLVEQLMMIKRMQKIPTPPFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGDQGQDFMDDVNVAFQYLLKLTPLLDKADQRCTCDCLSMLLQECNKLGLLSDSNTASLTAKRFGDRESAPKLKTGDNANKQPNPVLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKMWDFLWTCFGIFIINVWDVSPSFPIAKSASVRALLFDISFLMLCHVVQTYGSEVVLSEPSPLGETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICISIPAAILEILNAWENGLLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLITPLYAENTLQFYSERVTIMSSIMEHMCADVFQQMGAALRPPVESQEQIPYRNLLPAKEPIRKALSSQFQTVLRKGWVDSQALHLFEGLLNMGGVFWFTNNLIKELLKETRREWANRAVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWHSLSDPPGKALAKLSVWCALSSYSSHHKGPLSARQRKRQKEDIEDYNSLFPLEDTQPSKLMRLLSSNEDEPVTLSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSIVGSKMAGPHTQFVQSFIEECVECLEQGSRGSILQFMPFTMVSELVKLPALANPKVVLAITDLTLPLGRRVAAKAISAL
Length978
PositionTail
OrganismOryzias latipes (Japanese rice fish) (Japanese killifish)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae> Oryzias.
Aromaticity0.07
Grand average of hydropathy0.021
Instability index48.48
Isoelectric point6.45
Molecular weight109686.72
Publications
PubMed=17554307

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28925
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.82|      17|      33|     673|     689|       1
---------------------------------------------------------------------------
  673-  689 (31.23/20.08)	LRPP.VESQEQIPYRNLL
  707-  724 (24.59/14.29)	LRKGwVDSQALHLFEGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.79|      13|      17|     273|     288|       2
---------------------------------------------------------------------------
  273-  285 (24.17/ 8.44)	IPTPPFVLEI.WKA
  291-  304 (17.62/ 9.86)	IESPEGTEELkWTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.59|      31|     246|      88|     120|       3
---------------------------------------------------------------------------
   88-  120 (55.81/39.13)	FSRDLCVKSLLDIIDMFC.CrlSCHGK.AEEC..IGL
  337-  371 (45.79/25.99)	FQYLLKLTPLLDKADQRCtC..DCLSMlLQECnkLGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.27|      33|     570|     181|     242|       4
---------------------------------------------------------------------------
  145-  180 (48.12/15.78)	LGPVPsiEAILRTCQERLHTLMKSTKNRALVHiARL
  200-  232 (54.15/85.23)	LGNVP..NQTLRTSLEESLFLVKSIPSMLSVQ.CEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.17|      14|      35|     504|     518|       6
---------------------------------------------------------------------------
  504-  518 (24.18/17.87)	PSPlGETPFFETWLQ
  537-  550 (23.99/12.81)	PEP.GKVESLVTLLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.07|      14|     239|     234|     247|      10
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  234-  247 (23.63/11.67)	VRASFPSVHAFIML
  254-  267 (23.45/11.54)	IGEIQPLVEQLMMI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.95|      33|      99|     633|     669|      11
---------------------------------------------------------------------------
  633-  669 (48.54/54.26)	QLITPLYAENTLQFYSERVTIMSSImehMCADVfQQM
  735-  767 (56.41/44.48)	NLIKELLKETRREWANRAVELLYSI...FCLDT.QQI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28925 with Med24 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA