<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28925

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWTDYQWAVNIKKNFPKGATWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYASVLTAISKFDDFSRDLCVKSLLDIIDMFCCRLSCHGKAEECIGLCRALLGVVVWLLQACAWYCENLRELGPVPSIEAILRTCQERLHTLMKSTKNRALVHIARLEDQGSWNNVEQAVIKVTEGLGNVPNQTLRTSLEESLFLVKSIPSMLSVQCELPVRASFPSVHAFIMLEATMNLIGEIQPLVEQLMMIKRMQKIPTPPFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGDQGQDFMDDVNVAFQYLLKLTPLLDKADQRCTCDCLSMLLQECNKLGLLSDSNTASLTAKRFGDRESAPKLKTGDNANKQPNPVLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKMWDFLWTCFGIFIINVWDVSPSFPIAKSASVRALLFDISFLMLCHVVQTYGSEVVLSEPSPLGETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICISIPAAILEILNAWENGLLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLITPLYAENTLQFYSERVTIMSSIMEHMCADVFQQMGAALRPPVESQEQIPYRNLLPAKEPIRKALSSQFQTVLRKGWVDSQALHLFEGLLNMGGVFWFTNNLIKELLKETRREWANRAVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWHSLSDPPGKALAKLSVWCALSSYSSHHKGPLSARQRKRQKEDIEDYNSLFPLEDTQPSKLMRLLSSNEDEPVTLSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSIVGSKMAGPHTQFVQSFIEECVECLEQGSRGSILQFMPFTMVSELVKLPALANPKVVLAITDLTLPLGRRVAAKAISAL
Length978
PositionTail
OrganismOryzias latipes (Japanese rice fish) (Japanese killifish)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae> Oryzias.
Aromaticity0.07
Grand average of hydropathy0.021
Instability index48.48
Isoelectric point6.45
Molecular weight109686.72
Publications
PubMed=17554307

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28925
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.82|      17|      33|     673|     689|       1
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  673-  689 (31.23/20.08)	LRPP.VESQEQIPYRNLL
  707-  724 (24.59/14.29)	LRKGwVDSQALHLFEGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.79|      13|      17|     273|     288|       2
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  273-  285 (24.17/ 8.44)	IPTPPFVLEI.WKA
  291-  304 (17.62/ 9.86)	IESPEGTEELkWTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.59|      31|     246|      88|     120|       3
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   88-  120 (55.81/39.13)	FSRDLCVKSLLDIIDMFC.CrlSCHGK.AEEC..IGL
  337-  371 (45.79/25.99)	FQYLLKLTPLLDKADQRCtC..DCLSMlLQECnkLGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.27|      33|     570|     181|     242|       4
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  145-  180 (48.12/15.78)	LGPVPsiEAILRTCQERLHTLMKSTKNRALVHiARL
  200-  232 (54.15/85.23)	LGNVP..NQTLRTSLEESLFLVKSIPSMLSVQ.CEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.17|      14|      35|     504|     518|       6
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  504-  518 (24.18/17.87)	PSPlGETPFFETWLQ
  537-  550 (23.99/12.81)	PEP.GKVESLVTLLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.07|      14|     239|     234|     247|      10
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  234-  247 (23.63/11.67)	VRASFPSVHAFIML
  254-  267 (23.45/11.54)	IGEIQPLVEQLMMI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.95|      33|      99|     633|     669|      11
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  633-  669 (48.54/54.26)	QLITPLYAENTLQFYSERVTIMSSImehMCADVfQQM
  735-  767 (56.41/44.48)	NLIKELLKETRREWANRAVELLYSI...FCLDT.QQI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28925 with Med24 domain of Kingdom Metazoa
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