<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28909

Description Mediator of RNA polymerase II transcription subunit 18
SequenceMVQQLSLFGAIDDDSYSLFVSTITTLSGNPPILFARLSTIWKPNPEYEINNTNSKNQLVEKARINVSKTLSLNSFNLPESEIMDYNLLKTLPNDENTGIIDSSRINEILQSKDLSAWSFAISDIPASASSNNRKVSVQNISETVLLSSTGSSSNLTHFMNELAYVSEFKYVTIGIKFNLKHNLIIELQKIWNVNDENSNTQITKGGFLIKAFINVAKATDVDKINHNESVLLNLQKELQGYVNLSIPDRSSMDSRMAYDI
Length260
PositionHead
OrganismKazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) (Yeast) (Kluyveromyces africanus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Kazachstania.
Aromaticity0.08
Grand average of hydropathy-0.226
Instability index35.64
Isoelectric point5.15
Molecular weight29075.46
Publications
PubMed=22123960

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364150
GO - Cellular Component
core mediator complex	GO:0070847	IEA:EnsemblFungi
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
RNA polymerase II core promoter sequence-specific DNA binding	GO:0000979	IEA:EnsemblFungi
transcription coactivator activity	GO:0003713	IEA:EnsemblFungi
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IEA:EnsemblFungi
RNA polymerase II preinitiation complex assembly	GO:0051123	IEA:EnsemblFungi
termination of RNA polymerase II transcription	GO:0006369	IEA:EnsemblFungi
transcription open complex formation at RNA polymerase II promoter	GO:0001113	IEA:EnsemblFungi

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP28909
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.76|      12|      99|      75|      96|       1
---------------------------------------------------------------------------
   45-   56 (23.32/ 7.08)	PEYEINN.....T..NSKN
   78-   96 (12.44/16.83)	PESEIMDynllkTlpNDEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.99|      18|      43|      58|      75|       2
---------------------------------------------------------------------------
   58-   75 (30.13/19.45)	LVEKARIN...VSKTLSLNSF
   99-  119 (27.86/17.48)	IIDSSRINeilQSKDLSAWSF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28909 with Med18 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) RMAYDI
255
260