<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28896

Description Uncharacterized protein
SequenceMVAKSATTASTNSIHNGTLFEDSESVTLKYERNRLTSCLDDILKLSSEMIVQEQLKTIQLSNSIVSGFNINQQRQLKDKIHTFHSILDDIDITLANTSNYIVQLTEIGTERQIQIKQEEEVLRRKKQLQQEEELRRKKQLEEEELKKKKQLEADDELKRKKIQEQEDELNLMGDVKLDFDDNLQTQTDKNNDLLSSFNEPSSLLKVPSDIPDLLMTQPNQPTNQQQQPSSNITNDNSTTLQQPDQLQQQKEQQQQKEQQQQQQPLQMFSDLDNLDIDMFTDLDNSNFGTNTFDNNNTTKDTTGNNMDTNISNSLGLSANNDNNNPSDLTNGLDSLQDNGEDYLTLNDINDLNIDWSNTGQGDSNDLDLNNFSI
Length373
PositionTail
OrganismKazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) (Yeast) (Kluyveromyces africanus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Kazachstania.
Aromaticity0.04
Grand average of hydropathy-1.047
Instability index52.73
Isoelectric point4.29
Molecular weight42619.97
Publications
PubMed=22123960

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28896
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.40|      19|      20|     118|     137|       1
---------------------------------------------------------------------------
  122-  143 (28.10/13.53)	LRRKKQLQQE.EELRRK..kqlEEE
  145-  168 (23.82/ 6.67)	LKKKKQLEAD.DELKRKkiqeqEDE
  240-  257 (20.49/ 7.13)	LQQPDQLQQQkEQQQQK.....E..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.09|      25|      26|     278|     303|       2
---------------------------------------------------------------------------
  278-  303 (42.40/21.50)	MFTDLDNS.NFGTNTfDNNNTTKDTTG
  306-  331 (41.69/17.33)	MDTNISNSlGLSANN.DNNNPSDLTNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.01|      29|      47|      12|      42|       3
---------------------------------------------------------------------------
   12-   42 (47.16/38.22)	NSIHNGtlFEDSESVTLKYERNRLTSCLDDI
   62-   90 (51.86/35.48)	NSIVSG..FNINQQRQLKDKIHTFHSILDDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.44|      20|      20|     181|     200|       4
---------------------------------------------------------------------------
  181-  200 (33.09/17.11)	DNLQTQTDKNNDLLSSFNEP
  202-  221 (33.36/17.31)	SLLKVPSDIPDLLMTQPNQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.61|      11|      22|     336|     347|       8
---------------------------------------------------------------------------
  336-  347 (15.53/10.80)	QDNGEDyLTLND
  360-  370 (20.08/ 8.92)	QGDSND.LDLNN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28896 with Med2 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EELRRKKQLEEEELKKKKQLEADDELKRKKIQEQEDELNLMGDVKLDFDDNLQTQTDKNNDLLSSFNEPSSLLKVPSDIPDLLMTQPNQPTNQQQQPSSNITNDNSTTLQQPDQLQQQKEQQQQKEQQQQQQPLQMFSDLDNLDIDMFTDLDNSNFGTNTFDNNNTTKDTTGNNMDTNISNSLGLSANNDNNNPSDLTNGLDSLQDNGEDYL
132
343










Molecular Recognition Features






MoRF SequenceStartStop




1) MFTDL
2) NGEDYLTLNDINDLNIDWSN
278
338
282
357