<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28889
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MYSLRQNQIAWSRTGIIAYGDSESSEGNLCITFLETVNGSNWRFHPPQRYIIHPQLHEIPTSQGSVGGSNINVGIASPTTVPSASTHVRPNIHFFYNISSIHWNDYFSLPGDMLTVCDEIGNVTMMITGQGLEGATTFEKLTLLFQDNIYKMHNHAMPLSPVNQLQNTLLEKKQTKKEYNTTILDFHWISSSKAIIGSQFCVFDSSVKCYRNKAQQVSPFGVFYPPFMKYACLGIRRNGQIDFWYQFSNSKDHKKITLQLFYSQDQRSKELDWFEFAKLTPINEEQALLITTYSKLSKKLSFYKLNVSWNAPADKSENLLNDPTLSVKLILESNVERVDSEGNIIELMNIHPLFKSPLIKEPSPEILLIYRVCGTNKSIIRRQKITHIDLSTEYLSILKPDLPSTQSGKGGFLKSERYSISQSGELKLDNIVVHVTSELIDGFITFYFENGSVATYNQNDWILETERSKKTTGSSNFSNVIMSILSSGFHYPALPPSGVIEWMTVSPSMAGIITKIVKDPVPKFFPVYQNDVLSKANDNINAVAFAFSFANITHRQLASEDLTIACKTHILKIAKLDVKRAEDFIVILMSNLFSFFNVSPDAPKDIMDKMIMSRPIQKIMLLQLELGSGFGDESIAKIARVILYLKNILFALSGVSRNLQFAVEQMNNSSNSTKSIFPASFSKQDLIHSIIPIAKWFVKFTTYLIQEVLLLINNPLDIGPTLVLGIFGAKMPRHLILTILSEIKKIIQLITKFPENTYPVLNESSHFLKMVLSESPVNFEKFETFLVDVNNKFTALNEQQVPNARETSLAREYSLLIRGVVPTDQSKITEFLLNYSRNAIISRVNAANIFFSDTSGLSISNDELFVPKLHHLLKPIADGLIIEPQDLPAGMKSSRKFSQTAFDGITYDYFSQLEMQTGKLKRCSRCGCVTRAGYVISPDKTIVATSIQTRRWPTMYTRNCVCSGMLYDLESETNSST |
Length | 977 |
Position | Tail |
Organism | Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) (Yeast) (Kluyveromyces africanus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Kazachstania.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.107 |
Instability index | 54.84 |
Isoelectric point | 8.44 |
Molecular weight | 110268.53 |
Publications | PubMed=22123960
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | core mediator complex GO:0070847 IEA:EnsemblFungi
mediator complex GO:0016592 IEA:EnsemblFungi
|
GO - Biological Function | RNA polymerase II activating transcription factor binding GO:0001102 IEA:EnsemblFungi
|
GO - Biological Process | negative regulation of transcription by RNA polymerase II GO:0000122 IEA:EnsemblFungi
positive regulation of transcription by RNA polymerase II GO:0045944 IEA:EnsemblFungi
regulation of establishment of protein localization to chromosome GO:0070202 IEA:EnsemblFungi
RNA polymerase II preinitiation complex assembly GO:0051123 IEA:EnsemblFungi
|
Interaction
Repeat regions
Repeats |
>MDP28889
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 86.41| 27| 148| 303| 352| 2
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306- 332 (46.68/67.34) NVSWNAPADKSENL.LNDPTLSVKLI.LE
597- 625 (39.73/10.87) NVSPDAPKDIMDKMiMSRPIQKIMLLqLE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 254.63| 69| 84| 389| 459| 3
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389- 447 (77.67/50.47) ...........................DLSTEYLSILKPDLPSTQ...SGKGGFLKSERYSISQSGELkLDNIVVHVTSELIDGFITFY
449- 528 (95.34/60.51) ENGSVATYNQNdwileterskkttgssNFSNVIMSILSSGFHYPA...LPPSGVI..EWMTVSPS....MAGIITKIVKDPVPKFFPVY
529- 596 (81.63/46.28) QNDVLSKANDN............inavAFAFSFANITHRQLASEDltiACKTHILKIAKLDVKRAEDF....IVI.....LMSNLFSFF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 165.54| 53| 418| 203| 265| 4
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204- 265 (81.24/90.07) DSSVkcyrNKAQQVspfgVFYPPFMKYACLGIRRNGQIDFwYQFSNSKDH.KKITLQLFYSQD
632- 685 (84.30/56.60) DESI....AKIARV....ILYLKNILFALSGVSRNLQFAV.EQMNNSSNStKSIFPASFSKQD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 176.55| 67| 83| 745| 814| 5
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745- 769 (21.76/ 7.05) .........................................................KIIQLI.TKFPENT.YPVLNESSHFLK
770- 852 (84.73/60.71) MVLSESPVNFEKFETFLVDVNNKFTaLNEQQVPNARETSlaREYSllirgvvptdqsKITEFL.LNYSRNAiISRVNAANIFFS
857- 907 (70.06/41.15) LSISNDELFVPKLHHLLKPIADGLI.IEPQDLPAGMKSS..RKFS..................qTAFDGIT.Y...........
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