<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28876

Description Uncharacterized protein
SequenceMLARNNGLGDPVLLAQDETSDFLNDAKAWFQLGADRDEKISKRKKDRDIVASKEAAAAAPAPQANGHSPLGLRRASNAAAAGAMYPTPPDGVQNPLGITPSMDGTTSSPGAPGTTMAVVDIDTAMADTGTHDAPTTSTNQHHEAYADGWQPSDNKRDRADSFLAGDSDNLFGDMGPDMFGDADITDADFSFFDEEGGDDLDLSGLPDLSMPDASSAHSALPVSIPEPTKMMVPTAEEAKPVPSPPVFAKPELKHARSTLLDEGKQKSNADKSAGAKRASSPFDPDTVYKRVRASLADIRSAPQETPTRKGSIFDSVDFDPVLPLVNKKYEQGGRFGCPPIFHGQSQDASKQPGAQWPPTTDYLRRHGRQRRALRQPEHTNALIRTITGNLENSSLVDKRP
Length400
PositionKinase
OrganismColletotrichum higginsianum (strain IMI 349063) (Crucifer anthracnose fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum> Colletotrichum destructivum species complex.
Aromaticity0.06
Grand average of hydropathy-0.706
Instability index48.07
Isoelectric point5.12
Molecular weight42792.79
Publications
PubMed=22885923

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28876
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.87|      16|      21|      98|     114|       1
---------------------------------------------------------------------------
   98-  114 (25.58/17.09)	ITPSMdGTTSSPGAPGT
  121-  136 (28.30/14.19)	IDTAM.ADTGTHDAPTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.81|      15|      18|     166|     183|       3
---------------------------------------------------------------------------
  166-  183 (24.62/20.09)	DSD.NLFGDMGPDmfgDAD
  186-  201 (24.19/11.00)	DADfSFFDEEGGD...DLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.75|      47|      91|     205|     257|       4
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  205-  257 (77.91/57.48)	LPDL.SMP.DASSAHSALPVSIP.EPTKMMV.PTAEEAKPVPSPPVFakpelkHARS
  295-  345 (67.85/38.95)	LADIrSAPqETPTRKGSIFDSVDfDPVLPLVnKKYEQGGRFGCPPIF......HGQS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28876 with Med13 domain of Kingdom Fungi
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