<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28875

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSFHPRTPQSPSQFSPGTSDLTSSMNSSVQSTTTTLPTPAHSVNGSASQPSDMSQDIVMGDDSPHKRKRPLEDLGDREQKKVHIEDSKTGIEALHLDVGEKYLLCQTPHHERLPRITEDLFEMFNLTGIAAEVAREKPNGEKNALRKTYKGQIKKLGILGRFDSVAQDWDAPREREGDGGDKKRETYHGFRELLEIPDAEFWGTRKDPITNGLSGTVKSILNRATTMAKGPIPAKDWDSSVLGDLAPGSVDALKQGLAGKATAPGTPSATTPNPFARKQQQGPPGAVRPQRTTKKRGYGENTYEGYGEGFPDDGYSTGDGDDRGGQKRRKKDGGNGQAFPNAMRPQGYGAVGA
Length353
PositionHead
OrganismColletotrichum higginsianum (strain IMI 349063) (Crucifer anthracnose fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum> Colletotrichum destructivum species complex.
Aromaticity0.06
Grand average of hydropathy-0.947
Instability index41.15
Isoelectric point8.41
Molecular weight38242.95
Publications
PubMed=22885923

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP28875
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     194.06|      36|      65|     251|     286|       1
---------------------------------------------------------------------------
  207-  244 (47.39/23.36)	DPITNGLSGTVKSilnRATTMAKGPIP.AKDWDSSVLGD
  251-  286 (60.08/31.76)	DALKQGLAGKATA...PGTPSATTPNPFARKQQQGPPGA
  293-  317 (30.64/12.27)	TK.KRGY.GENTY...EGYGEGFPDDGYST.........
  319-  353 (55.95/29.02)	DGDDRGGQKRRKK...DGGNGQAFPNAM.RPQGYGAVGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.45|      30|      35|     135|     169|       2
---------------------------------------------------------------------------
  135-  169 (40.29/38.90)	REKPNGEKNALRKTYKGqIKKLgiLGRFDsvAQDW
  173-  202 (56.16/33.88)	REREGDGGDKKRETYHG.FREL..LEIPD..AEFW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.25|      11|      43|      64|      74|       3
---------------------------------------------------------------------------
   64-   74 (21.64/14.98)	PHKRKRP..LEDL
  108-  120 (17.61/10.78)	PHHERLPriTEDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28875 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSVDALKQGLAGKATAPGTPSATTPNPFARKQQQGPPGAVRPQRTTKKRGYGENTYEGYGEGFPDDGYSTGDGDDRGGQKRRKKDGGNGQAFPNAMRPQGYGAVGA
2) MSFHPRTPQSPSQFSPGTSDLTSSMNSSVQSTTTTLPTPAHSVNGSASQPSDMSQDIVMGDDSPHKRKRPLEDLGDREQKKVHIEDSKTG
248
1
353
90










Molecular Recognition Features






MoRF SequenceStartStop




1) KRRKKD
327
332