<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28864

Description Mediator of RNA polymerase II transcription subunit 8
SequencePSVLDSFALLSGQLNTLNKVLKHEKTPLLRNQVIIPLVLSPDRDEEIMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLITDAARISPDAAQKQIQSLNKMCSNLLEKISKEERESESGGLRQNKQTFNPADTNALVAAVAFGKGLSNRRPPGSGASVQSGQPGAGAIIAGASGMQQVPMTGAPAQQQPMLAGVQMAPAGQPGKV
Length208
PositionHead
OrganismTaeniopygia guttata (Zebra finch) (Poephila guttata)
KingdomMetazoa
Lineage
Aromaticity0.02
Grand average of hydropathy-0.450
Instability index53.47
Isoelectric point7.36
Molecular weight22194.99
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28864
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.16|      13|      17|      65|      81|       1
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   65-   81 (18.59/18.48)	DHLRTKPDpeveEQEKQ
   85-   97 (22.56/11.56)	DAARISPD....AAQKQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28864 with Med8 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVAFGKGLSNRRPPGSGASVQSGQPGAGAIIAGASGMQQVPMTGAPAQQQPMLAGVQMAPAGQPGKV
2) FSHEVVPDHLRTKPDPEVEEQEKQLITDAARI
142
58
208
89










Molecular Recognition Features






MoRF SequenceStartStop




NANANA