<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28850
Description |
Mediator of RNA polymerase II transcription subunit 15 |
Sequence | WLSTKFRQKLVSQIDEAMRKAGVAHNKSSKDMESHVFMKAKTREEYLSLVARLIIHFRDIHNKKSQASVSDPMNALQNLTGGPAAGAPGMGMASRAQGAPMSGMTGLGPMAQQMSLPGQQQPPGTSGMAPHGMPGVSTATQQTQLQLQQIAQQQQQQQQQFQQQQVALQQQQQFQAQQSAMQQQFQVQQQQAAAAAVAQQQQQQQQQLQAHMLKLQMQQQQNQQQQQQLQRIAQMQQLQAAQQQQQQQQQQQQIPQQQIQQQPPQQVMQQQMQQIQQQQQQQQQQQQQQQQVAQAQQSQLPPQSQPQPQPMVSQPQAISGQIPSQVMPVTLTPQQLKAMQVRAQLVQQQQQQAAAAAVQAAQAQAAQMGASGQMITAPMARGGMQIRPRFPPTSAVPATPPSSMPLGGQQMPQVSQNNITMMSSPSPVQQAQTPQSMPPPPQPQPSPQPGQPTSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPAAARTPQNFSVPSPGPLNTPGNPNSVMSPASSGQSEEQQYLEKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRTFMPAMTAIHGQPITAPVASPRKRKYEEDERQTIPNVLQGEVARLNPKFLVNLDPSHCSNNGTVHLICKLDDKNLPNVPPLQLSVPADYPDQSPLWIKNPRQYAANPFLQSVYRYMTSKLLQLPDKHSVTALLNTWAQSIRQACLSAA |
Length | 779 |
Position | Tail |
Organism | Taeniopygia guttata (Zebra finch) (Poephila guttata) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda>
Coelurosauria> Aves> Neognathae> Passeriformes> Passeroidea> Estrildidae>
Estrildinae> Taeniopygia.
|
Aromaticity | 0.03 |
Grand average of hydropathy | -0.773 |
Instability index | 85.81 |
Isoelectric point | 9.90 |
Molecular weight | 85989.80 |
Publications | PubMed=20360741
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364148
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
nucleoplasm GO:0005654 IEA:Ensembl
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP28850
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 482.96| 60| 60| 178| 237| 1
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110- 157 (56.58/ 6.68) ............MAQQMSLPGQQQPPGTSGMAPhgmpgVSTATQQTQLQLQQ......IAQQQ.QQ...Q
158- 204 (85.08/15.42) QQQFQQQQVALQ.QQQQFQ............AQ.....QSAMQQQFQVQQQQ.AAAAAVAQQQ.QQ...Q
205- 262 (97.75/19.31) QQQLQAHMLKLQMQQQQNQQQQQQLQRIAQMQQ.....LQAAQQQQQQQQQQ.Q...QIPQQQiQQ...Q
265- 332 (87.28/16.09) QQVMQQQMQQIQQQQQQQQQQQQQQQQVAQAQQsqlppQSQPQPQPMVSQPQ.AISGQIPSQV.MPvtlT
372- 432 (80.81/14.11) GQMITAPMARGGMQIRPRFPPTSAVPATPPSSM.....PLGGQQMPQVSQNNiTMMSSPSPVQ.QA...Q
433- 491 (75.46/12.47) TPQSMPPPPQPQPSPQPGQPTSQPNSNVSSGPA...psPSSFLPSPSPQPSQ.SPAAARTPQN.......
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.62| 18| 23| 673| 690| 2
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673- 690 (32.82/17.04) VARLNPKFLVNLDPSHCS
698- 715 (32.81/17.04) ICKLDDKNLPNVPPLQLS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.21| 26| 27| 554| 580| 3
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550- 576 (39.82/23.70) RKKD..LSKMKSLLDILTDPSKRCPlKTL
577- 604 (44.39/22.64) QKCEiaLEKLKNDMAVPTPPPPPVP.PTK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.11| 11| 15| 81| 91| 5
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81- 91 (22.77/10.59) GGPAAGAPGMG
98- 108 (22.34/10.26) GAPMSGMTGLG
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