<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28785

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPRGATWDILNLAEALLEQAMVGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRELCVQALLDVMDMFCDRLSCHGKAEECIALCRALLSTLHWLLRCTVASAEWLQEAPEASGQSSAEKQLALCLQRLEKTLGSTKNRALLHIAKLEEASCWAAIEQCLLKLGETLAKLSNPQLRSQAEQCGALIRSIPSMLSVRSEQLHETGFPTVHAVVLLEGTMNLTGEIQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTYLKIPQVLVKLKKYSHGDRDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTNFLLQECNKQGLLSEANFANLMAKCKADREQAPQLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGPGESTKTASVRALLFDISFLMLCHVAQTYGSEVILSEASSGSEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMNSILEHMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTGVFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLLKELLKETRKEHALRAVELLYSVFCLDMQQAALVLLGHILPGLLTDSSKWPSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDAQPSKLMRLLSSNEEDANTLASPTDRSMNSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length989
PositionTail
OrganismCavia porcellus (Guinea pig)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Hystricomorpha> Caviidae> Cavia.
Aromaticity0.07
Grand average of hydropathy0.023
Instability index46.46
Isoelectric point6.26
Molecular weight110009.73
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28785
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     263.06|      81|     115|     616|     701|       1
---------------------------------------------------------------------------
  616-  701 (125.98/109.12)	LAVCAVAWLVAHV..RMLGLDEREKSLQMIrQLagpLYSENTLQFYNERVVIMNSILEHMCADVlQQTATQIKFPSTGVDTMPYWNLL
  736-  818 (137.08/99.18)	LHMGGVYWFCNNLlkELLKETRKEHALRAV.EL...LYSVFCLDMQQAALVLLGHILPGLLTDS.SKWPSLMDPPGTALAKLAVWCAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.20|      24|      37|     371|     394|       4
---------------------------------------------------------------------------
  371-  394 (41.16/30.80)	GLL..SEANFANLMAKCKADREQAPQ
  408-  433 (36.03/25.96)	GLIlrAEPTVTNILKTMDADHSKSPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.95|      11|      16|     207|     217|       5
---------------------------------------------------------------------------
  207-  217 (19.74/13.49)	SNPQLRS.QAEQ
  224-  235 (15.20/ 8.46)	SIPSMLSvRSEQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28785 with Med24 domain of Kingdom Metazoa
Unable to open file!