<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28759

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMNDLPDEIVHITQGFIPISLLLTRLAQSTHNMIQDKIAELAKMPISTAATNGSTNYTQSAPDDTSMENLKKKGVLLNFIQDMHSKWVKALVITEWSRKASMVSKLIDLKFHIDQQRQLYDAALDNIINVKRDLTYARMPSPDLKTALQILATGKAPWMPDLQYIELPPLTLEEQLRGIGDLDTLLSLRLNLDDFDKIPYQFQNYTIGSGRVTFKVAGEFEVDLTIADEDFEKQFWFIDFRFAFRPVTLTLPDTLRAFLENCVNEALAKDGLAGCYQFLHEFVLTAKINELKRQALQLNRTSWSGTLAVEPLNRALAIQYWTSRSAATGLKNWVIVAVGSGRKPGGRPDPKATSSLVVKWYRDNKEVKDVEVKMDFQNLSAESLLNDIVGRHIEFILSSIHSGLLATPRYKNRDTGVALNISRADPVTSCLALQVGYGGTVSLLIEPISGAFAMKPHSKFSMQPELQLNNGKNPLDDGVNFLEHLRCAIIEDELGRMGTARGWSVRKAPVNTDELKSITKMRRWSRTLWLQHGGWGSPWFVVVILSLDGDEWWLLETASKFSTRLPLNKGAPQVSGTFWDNLNTFAAGIIAQSIDKRELRRLKIKSQSSGSADLSLPQQVRMPSIEVALSNIFPSMMQEAAENITPQSLGVIIEPNEDLQTLSLIRPNSTSSSTTKQPWAEDMMAIRFKGVHAVASRAGPDVGHATAHHLVCTSEAVIRVRQPSKFLALKGMVDRDVSYDPKRGEFVLQIQRPVTQPIFDILKSRVKAIDRFVNFLEAMENAKGSIIGESITLKAVVFCYSAPVSTQPKDETAAPVPSPERWRVKMDLSNEDIDIHIEKRNPHLRVIDLARNLASTEGGIGPLMAWLPVSLPALKAIDQLDAEWDELSKEGQGRLNFSMKSLTWMNIKYNIFGANGTKAKTKKTICLDVRIKPRRGQVWWHAWRSDADAAADDEFSKALKAVWDGKGSNWLGLATGAAAEANDGVRDMLLAIDKAIRGAITTSTGKRTH
Length1008
PositionTail
OrganismHypocrea atroviridis (strain ATCC 20476 / IMI 206040) (Trichoderma atroviride)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.08
Grand average of hydropathy-0.227
Instability index41.86
Isoelectric point8.61
Molecular weight112370.66
Publications
PubMed=21501500

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28759
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     396.41|     124|     293|     430|     604|       1
---------------------------------------------------------------------------
  474-  603 (207.21/178.29)	LDDGVNFLEHLRCA...IIEDELGRMGTARGWSvrkAPVNT...DELKS.ITKMRRWSRTLWLQHGGWG......SPWFVVVIL..SLDGDEWWLLETASKFSTRLPLNKGAPQVSGTfWDNLNTFAAGIIaqSIDKRELRRLKI
  768-  906 (189.20/94.01)	IDRFVNFLEAMENAkgsIIGESITLKAVVFCYS...APVSTqpkDETAApVPSPERWRVKMDLSNEDIDihiekrNPHLRVIDLarNLASTEGGIGPLMAWLPVSLPALKAIDQLDAE.WDELSKEGQGRL..NFSMKSLTWMNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      50.83|      10|     115|     309|     318|       2
---------------------------------------------------------------------------
  309-  318 (16.83/ 7.92)	EPLNRALAIQ
  424-  433 (17.03/ 8.09)	DPVTSCLALQ
  445-  454 (16.96/ 8.02)	EPISGAFAMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.45|      23|      77|     154|     176|       5
---------------------------------------------------------------------------
  132-  148 (22.26/11.74)	......DLTYARMP.SPDLKTALQ
  154-  176 (42.86/30.43)	KAPWMPDLQYIELP.PLTLEEQLR
  232-  255 (38.33/26.32)	KQFWFIDFRFAFRPvTLTLPDTLR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28759 with Med14 domain of Kingdom Fungi
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