<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28756

Description Uncharacterized protein
SequenceMEPASKGPKACTTCAKAKARCIPGPDKDSKCERCQRLKRECVSQRPAPPRAKKPPKRSRVAELEKRLDELSSQFVDGAAAAAAINTRSSQQSGDSPSISVSSGNHPSATERPGQHQQQQQQQQQQQQQQRQRQQRRQKNKCDSIVTFEYLFPSPRSESAEVSGWTSEVGSNDCVMAATEIWPTEAEAETLLLQYHASHARLAPFVIVPKHLMAADLRRHRPFLWRVVMMISCFIDGPRQHRMGKEVLAELGRMSVLDSTRNLETLQGLLLTISWLNFCLKSAQLTNLLFLARSMSLSSGGFGISCGAGGNSNKDEVKWGELEHARAYLGTYYLNAIVFNTNKKVDAFMNTSQLDNYCNLLTSPGEYHSDLYLARLVKIQTLSQSISMAMLDQQPMQLPLTMARLTYSTGTLQCHLAISEVLLADMAISDSHCAAISLPHSDRIHLLWSCLHALRRFYAVASVKSCDMIDQVERSFLGINASDLAYAIITGIKLLLVRIPDWDPRYIISELGIREMLDEEIEHVGEIVARRKSDRWPEEDPMDRMHKLLMYGRDLVNMQIQQVAAEMEGSEVNRRHSLLPSSTLATANKGEGGQGWAMAGMEDLDDDLWQNFMNDTAWNLNGEPMVMDSF
Length629
PositionTail
OrganismHypocrea atroviridis (strain ATCC 20476 / IMI 206040) (Trichoderma atroviride)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.06
Grand average of hydropathy-0.387
Instability index56.72
Isoelectric point6.64
Molecular weight70502.68
Publications
PubMed=21501500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
DNA-binding transcription factor activity, RNA polymerase II-specific	GO:0000981	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28756
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.05|      45|     124|     305|     353|       1
---------------------------------------------------------------------------
  305-  353 (72.25/67.22)	CGAGGNSNKDEVK..WGELeHArayLGTYYLNAIVFNTN..KKVD.AFM..NTSQL
  432-  483 (63.81/45.77)	CAAISLPHSDRIHllWSCL.HA...LRRFYAVASVKSCDmiDQVErSFLgiNASDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28756 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RCQRLKRECVSQRPAPPRAKKPPKRSRVAELEKRLDELSSQFVDGAAAAAAINTRSSQQSGDSPSISVSSGNHPSATERPGQHQQQQQQQQQQQQQQRQRQQRRQK
33
138










Molecular Recognition Features






MoRF SequenceStartStop




1) FEYLFP
2) PASKGPKACTTCAKAKARCIPGPDKDSKCERCQRLKRECVSQRPAPPRAKKPPKRSRVAEL
147
3
152
63