<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28751

Description Uncharacterized protein
SequenceMASSDVRDVLNLPDGAAGGPRPSKKQKISAPRPNLKGLAREVHNLGGDNPIAIVPEVTQFKKRRFASRKPVARWELRPFQNSGRTDASLTLRHWRRVEEGKQPSSTVGGGEGQAGEDDVPGSKGEEEIEDSSYAKYNVQVSVPQYSDDQYHQVLENPDWTKEETDYLMGLVRDFDIRWPLIWDRYEWSPPATNGEADADGDESKAIVPATRSRSMEDLKARYYEVASRMMAVQKPVQYMTQPEFALHELMAHFNPQQEKLRKDFALNSFGRSREEAREEESLLLEIKRILARSDRFNEERRELYNRLDYPHAEQDINTFKSSTGLQTLLQNLMTADKSKKRKSIMGGEAPTTSGQPTPQQAAPETARRDSAAASTGPRDSAPAAAPAPGNKKAQQQQQQQQQQQQQAQQAQQQQSQPQERKKLTEQEEIIYGVTHHERLGSGPTFRTEKINKLFSHKSNQQQLRITNTLNELDVPAKLAMPTAATTHAFEQLLASVNSLLDARKVTDKIDAEIKLELAKKAEREKAAGLQEEAEKAEDADGDAKDDTAAADEPSKEEDNQGTTEGADPADEEKGDGEDAVPSDEAAAQPSVEQDDDDNDNAADNGKDEELESAAPKRSASVLSNTSDKAAKRQKK
Length635
PositionTail
OrganismHypocrea atroviridis (strain ATCC 20476 / IMI 206040) (Trichoderma atroviride)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.05
Grand average of hydropathy-1.072
Instability index59.26
Isoelectric point5.11
Molecular weight70589.68
Publications
PubMed=21501500

Function

Annotated function 
GO - Cellular Component
NuA4 histone acetyltransferase complex	GO:0035267	IEA:InterPro

GO - Biological Function
GO - Biological Process
chromatin remodeling	GO:0006338	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
histone H2A acetylation	GO:0043968	IEA:InterPro
histone H4 acetylation	GO:0043967	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28751
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.77|      32|      34|     528|     560|       1
---------------------------------------------------------------------------
  527-  559 (49.52/24.82)	AGLQEEAEKAEDADGDAKD....DTAAAdEPSKEEDN
  560-  595 (47.25/19.94)	QGTTEGADPADEEKGDGEDavpsDEAAA.QPSVEQDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.96|      17|      17|     230|     246|       2
---------------------------------------------------------------------------
  230-  246 (31.59/19.47)	MAVQKPVQYMTQPEFAL
  250-  266 (31.36/19.27)	MAHFNPQQEKLRKDFAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.69|      33|      34|     349|     382|       3
---------------------------------------------------------------------------
  349-  382 (51.99/26.04)	APtTSGQPTPQQAAPETARRDSAAASTGPRDSAP
  385-  417 (57.70/25.82)	AP.APGNKKAQQQQQQQQQQQQQAQQAQQQQSQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.14|      10|      15|     190|     199|       4
---------------------------------------------------------------------------
  190-  199 (17.89/10.48)	PATNGEADAD
  208-  217 (18.24/10.83)	PATRSRSMED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.52|      23|      36|      24|      46|       7
---------------------------------------------------------------------------
   24-   46 (38.50/22.50)	KKQKISAPRPNLKGLAREVHNLG
   61-   83 (41.02/24.42)	KKRRFASRKPVARWELRPFQNSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28751 with Med15 domain of Kingdom Fungi
Unable to open file!