<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28751

Description Uncharacterized protein
SequenceMASSDVRDVLNLPDGAAGGPRPSKKQKISAPRPNLKGLAREVHNLGGDNPIAIVPEVTQFKKRRFASRKPVARWELRPFQNSGRTDASLTLRHWRRVEEGKQPSSTVGGGEGQAGEDDVPGSKGEEEIEDSSYAKYNVQVSVPQYSDDQYHQVLENPDWTKEETDYLMGLVRDFDIRWPLIWDRYEWSPPATNGEADADGDESKAIVPATRSRSMEDLKARYYEVASRMMAVQKPVQYMTQPEFALHELMAHFNPQQEKLRKDFALNSFGRSREEAREEESLLLEIKRILARSDRFNEERRELYNRLDYPHAEQDINTFKSSTGLQTLLQNLMTADKSKKRKSIMGGEAPTTSGQPTPQQAAPETARRDSAAASTGPRDSAPAAAPAPGNKKAQQQQQQQQQQQQQAQQAQQQQSQPQERKKLTEQEEIIYGVTHHERLGSGPTFRTEKINKLFSHKSNQQQLRITNTLNELDVPAKLAMPTAATTHAFEQLLASVNSLLDARKVTDKIDAEIKLELAKKAEREKAAGLQEEAEKAEDADGDAKDDTAAADEPSKEEDNQGTTEGADPADEEKGDGEDAVPSDEAAAQPSVEQDDDDNDNAADNGKDEELESAAPKRSASVLSNTSDKAAKRQKK
Length635
PositionTail
OrganismHypocrea atroviridis (strain ATCC 20476 / IMI 206040) (Trichoderma atroviride)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.05
Grand average of hydropathy-1.072
Instability index59.26
Isoelectric point5.11
Molecular weight70589.68
Publications
PubMed=21501500

Function

Annotated function 
GO - Cellular Component
NuA4 histone acetyltransferase complex	GO:0035267	IEA:InterPro

GO - Biological Function
GO - Biological Process
chromatin remodeling	GO:0006338	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
histone H2A acetylation	GO:0043968	IEA:InterPro
histone H4 acetylation	GO:0043967	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28751
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.77|      32|      34|     528|     560|       1
---------------------------------------------------------------------------
  527-  559 (49.52/24.82)	AGLQEEAEKAEDADGDAKD....DTAAAdEPSKEEDN
  560-  595 (47.25/19.94)	QGTTEGADPADEEKGDGEDavpsDEAAA.QPSVEQDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.96|      17|      17|     230|     246|       2
---------------------------------------------------------------------------
  230-  246 (31.59/19.47)	MAVQKPVQYMTQPEFAL
  250-  266 (31.36/19.27)	MAHFNPQQEKLRKDFAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.69|      33|      34|     349|     382|       3
---------------------------------------------------------------------------
  349-  382 (51.99/26.04)	APtTSGQPTPQQAAPETARRDSAAASTGPRDSAP
  385-  417 (57.70/25.82)	AP.APGNKKAQQQQQQQQQQQQQAQQAQQQQSQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.14|      10|      15|     190|     199|       4
---------------------------------------------------------------------------
  190-  199 (17.89/10.48)	PATNGEADAD
  208-  217 (18.24/10.83)	PATRSRSMED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.52|      23|      36|      24|      46|       7
---------------------------------------------------------------------------
   24-   46 (38.50/22.50)	KKQKISAPRPNLKGLAREVHNLG
   61-   83 (41.02/24.42)	KKRRFASRKPVARWELRPFQNSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28751 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEIKLELAKKAEREKAAGLQEEAEKAEDADGDAKDDTAAADEPSKEEDNQGTTEGADPADEEKGDGEDAVPSDEAAAQPSVEQDDDDNDNAADNGKDEELESAAPKRSASVLSNTSDKAAKRQKK
2) ASLTLRHWRRVEEGKQPSSTVGGGEGQAGEDDVPGSKGEEEIED
3) ASSDVRDVLNLPDGAAGGPRPSKKQKISAPRPNLKGLAREVHNLGGDNPIAI
4) RRELYNRLDYPHAEQDINTFKSSTGLQTLLQNLMTADKSKKRKSIMGGEAPTTSGQPTPQQAAPETARRDSAAASTGPRDSAPAAAPAPGNKKAQQQQQQQQQQQQQAQQAQQQQSQPQERKKLTEQEEIIYGVTHHERLGSGPTFRTEKINKLFSHKSNQQQLRITNTLNELDVPAKLAMPTAATTHAFEQLLASVN
511
87
2
300
635
130
53
497










Molecular Recognition Features






MoRF SequenceStartStop




1) AADNGKDEELESAAPK
2) AKRQKK
3) ASVLSNT
4) EAAAQPSVE
5) FKKRRFASRKPVARWELRPFQ
6) GPRPSKKQKISAPRPNLKGLAREVH
7) RDVLNLPDGAA
8) SLTLRHWR
601
630
619
584
60
19
7
88
616
635
625
592
80
43
17
95